Miyakogusa Predicted Gene

Lj4g3v2775620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2775620.1 tr|G1MDL8|G1MDL8_AILME Ubiquitin
carboxyl-terminal hydrolase OS=Ailuropoda melanoleuca GN=USP30
PE=3,25.98,1e-17,UCH_2_2,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2, conserved site; UCH,Peptidase C19, u,CUFF.51620.1
         (572 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39370.1 | Symbols: UBP27 | ubiquitin-specific protease 27 | ...   317   2e-86
AT4G39370.3 | Symbols: UBP27 | ubiquitin-specific protease 27 | ...   309   3e-84
AT4G39370.2 | Symbols: UBP27 | ubiquitin-specific protease 27 | ...   231   1e-60
AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 | ...    58   2e-08
AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific proteas...    55   1e-07
AT2G32780.1 | Symbols: UBP1, ATUBP1 | ubiquitin-specific proteas...    54   2e-07
AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 | ch...    53   6e-07
AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...    52   8e-07
AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...    52   8e-07

>AT4G39370.1 | Symbols: UBP27 | ubiquitin-specific protease 27 |
           chr4:18306392-18308625 FORWARD LENGTH=494
          Length = 494

 Score =  317 bits (812), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/337 (48%), Positives = 225/337 (66%), Gaps = 7/337 (2%)

Query: 60  LLVPGLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMPLAASLV 119
            LVPGL NL NNCFLNV+LQALASC  F  FL  V+ +   +  +  E ++ +PL  +L 
Sbjct: 71  FLVPGLQNLGNNCFLNVILQALASCKDFRSFLQWVLED--ARGSLAGEQEEQLPLTFALS 128

Query: 120 ALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGCYA 179
           ALLQEL +V   + + +PR++M+ ++ Y  +FNLT QQDAAEA LHL+ SL+EE   CY 
Sbjct: 129 ALLQELGTVGSRRSVSNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYR 188

Query: 180 PNVSS-LADVCASNN-RIIAPIQR-DWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQIS 236
           P+ SS L+D+  S N R++AP +      E +RW +   GPFDGILGS+L CR+CSSQIS
Sbjct: 189 PSQSSNLSDILFSRNLRMLAPSEGLHGLMELKRWHKHLRGPFDGILGSTLMCRTCSSQIS 248

Query: 237 MNFEHFDCLPLSPVLS-DSFTIRVGCTLVDCLKQFIVAEHVENYHCSHCWHNAAIKYISX 295
           + F+ F  LPLSP+L    + I  GCTL  CLK+F+  E VENY C  CWH AA+KY+S 
Sbjct: 249 LEFQFFHTLPLSPLLHHGGYNIMSGCTLEHCLKKFLNTEKVENYFCYRCWHGAALKYLSV 308

Query: 296 XXXXXXXXXXXXXCSEQELCNCRTKFNLEKLPWSTRFSHVLKQLSIAQCPRILCIQLKRV 355
                        C  ++ C+C+T  +L+++PWS  +SH+LKQL IA+ P++LCIQ++R 
Sbjct: 309 IGAAETEIEKLRSCGGEDQCDCKTSLHLQRMPWSNSYSHILKQLIIARFPKLLCIQVQRA 368

Query: 356 HMSIFGEPVKLQGHISFPLILDVLPFTTTRLGVNIQE 392
             ++F E  KL GHI+FPL+L++  FT + +GVNI+E
Sbjct: 369 SFNMF-EEFKLSGHIAFPLVLNLSLFTPSSIGVNIEE 404



 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 489 SQEACLYQLVSVVEHFGRAGGGHYTVYRCARAETSDVSGDRCFNQTPRRWFCVSDSQVDA 548
           S+   +Y+LV+VVEHFGR G GHYTVYR  R  + +   + C       WF +SDS+V  
Sbjct: 418 SKNHGMYRLVTVVEHFGRTGSGHYTVYRSVRVFSQEEEEEDCDEDLS--WFSISDSEVCR 475

Query: 549 VSEEDVLSSEASLLFYERI 567
           VSE DVL +EASLLFYER+
Sbjct: 476 VSESDVLGAEASLLFYERL 494


>AT4G39370.3 | Symbols: UBP27 | ubiquitin-specific protease 27 |
           chr4:18306392-18308625 FORWARD LENGTH=505
          Length = 505

 Score =  309 bits (792), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/348 (46%), Positives = 225/348 (64%), Gaps = 18/348 (5%)

Query: 60  LLVPGLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMPLAASLV 119
            LVPGL NL NNCFLNV+LQALASC  F  FL  V+ +   +  +  E ++ +PL  +L 
Sbjct: 71  FLVPGLQNLGNNCFLNVILQALASCKDFRSFLQWVLED--ARGSLAGEQEEQLPLTFALS 128

Query: 120 ALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGCYA 179
           ALLQEL +V   + + +PR++M+ ++ Y  +FNLT QQDAAEA LHL+ SL+EE   CY 
Sbjct: 129 ALLQELGTVGSRRSVSNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYR 188

Query: 180 PNVSS-LADVCASNN-RIIAPIQR-DWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQIS 236
           P+ SS L+D+  S N R++AP +      E +RW +   GPFDGILGS+L CR+CSSQIS
Sbjct: 189 PSQSSNLSDILFSRNLRMLAPSEGLHGLMELKRWHKHLRGPFDGILGSTLMCRTCSSQIS 248

Query: 237 MNFEHFDCLPLSPVLS-DSFTIRVGCTLVDCLKQFIVAEHVENYHCSHCWHNAAIKYISX 295
           + F+ F  LPLSP+L    + I  GCTL  CLK+F+  E VENY C  CWH AA+KY+S 
Sbjct: 249 LEFQFFHTLPLSPLLHHGGYNIMSGCTLEHCLKKFLNTEKVENYFCYRCWHGAALKYLSV 308

Query: 296 XXXXXXXXXXXXXCSEQELCNCRTKFNLEKLPWSTRFSHVLKQLSIAQCPRI-------- 347
                        C  ++ C+C+T  +L+++PWS  +SH+LKQL IA+ P++        
Sbjct: 309 IGAAETEIEKLRSCGGEDQCDCKTSLHLQRMPWSNSYSHILKQLIIARFPKVFAYSLKLD 368

Query: 348 ---LCIQLKRVHMSIFGEPVKLQGHISFPLILDVLPFTTTRLGVNIQE 392
              LCIQ++R   ++F E  KL GHI+FPL+L++  FT + +GVNI+E
Sbjct: 369 VKLLCIQVQRASFNMF-EEFKLSGHIAFPLVLNLSLFTPSSIGVNIEE 415



 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 489 SQEACLYQLVSVVEHFGRAGGGHYTVYRCARAETSDVSGDRCFNQTPRRWFCVSDSQVDA 548
           S+   +Y+LV+VVEHFGR G GHYTVYR  R  + +   + C       WF +SDS+V  
Sbjct: 429 SKNHGMYRLVTVVEHFGRTGSGHYTVYRSVRVFSQEEEEEDCDEDLS--WFSISDSEVCR 486

Query: 549 VSEEDVLSSEASLLFYERI 567
           VSE DVL +EASLLFYER+
Sbjct: 487 VSESDVLGAEASLLFYERL 505


>AT4G39370.2 | Symbols: UBP27 | ubiquitin-specific protease 27 |
           chr4:18306392-18307931 FORWARD LENGTH=361
          Length = 361

 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 161/239 (67%), Gaps = 6/239 (2%)

Query: 60  LLVPGLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMPLAASLV 119
            LVPGL NL NNCFLNV+LQALASC  F  FL  V+ +   +  +  E ++ +PL  +L 
Sbjct: 71  FLVPGLQNLGNNCFLNVILQALASCKDFRSFLQWVLED--ARGSLAGEQEEQLPLTFALS 128

Query: 120 ALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGCYA 179
           ALLQEL +V   + + +PR++M+ ++ Y  +FNLT QQDAAEA LHL+ SL+EE   CY 
Sbjct: 129 ALLQELGTVGSRRSVSNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYR 188

Query: 180 PNVSS-LADVCASNN-RIIAPIQR-DWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQIS 236
           P+ SS L+D+  S N R++AP +      E +RW +   GPFDGILGS+L CR+CSSQIS
Sbjct: 189 PSQSSNLSDILFSRNLRMLAPSEGLHGLMELKRWHKHLRGPFDGILGSTLMCRTCSSQIS 248

Query: 237 MNFEHFDCLPLSPVL-SDSFTIRVGCTLVDCLKQFIVAEHVENYHCSHCWHNAAIKYIS 294
           + F+ F  LPLSP+L    + I  GCTL  CLK+F+  E VENY C  CWH AA+KY+S
Sbjct: 249 LEFQFFHTLPLSPLLHHGGYNIMSGCTLEHCLKKFLNTEKVENYFCYRCWHGAALKYLS 307


>AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 |
           chr1:11902629-11906900 FORWARD LENGTH=892
          Length = 892

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 86/204 (42%), Gaps = 22/204 (10%)

Query: 64  GLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMP------LAAS 117
           GL NL N CF+N  LQ LA            I E   QD   S+ +   P      LA +
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHT--------PPIVEYFLQDY-RSDINAKNPLGMRGELAIA 352

Query: 118 LVALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGC 177
              LL++L S SG+  + +PR     ++ + P F+  +Q D+ E    LL  L E+    
Sbjct: 353 FGELLRKLWS-SGQNTV-APRAFKTKLARFAPQFSGYNQHDSQEMLAFLLDGLHEDLNKV 410

Query: 178 YAPNVSSLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQISM 237
                    D     +  +A  +  WK  + R   + +  F G   S+L C  C  +IS+
Sbjct: 411 KRKPYIEAKDSDGRPDDEVA--EEKWKYHKARNDSVIVDVFQGQYKSTLVCPDC-GKISI 467

Query: 238 NFEHFD--CLPLSPVLSDSFTIRV 259
            F+ F    LPL    + S T+ V
Sbjct: 468 TFDPFMYLSLPLPSSRTRSMTVTV 491


>AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease 2
           | chr1:1369306-1372290 REVERSE LENGTH=961
          Length = 961

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 490 QEACLYQLVSVVEHFGRAGGGHYTVYRCARAETSDVSGDRCFNQTPRR---WFCVSDSQV 546
           ++  +Y+L  +VEH G   GGHY  Y         V G +   +T      W+ VSD+ V
Sbjct: 886 EDPPVYRLAGLVEHSGTMRGGHYVAY---------VRGGQRVKETDSSSTAWYNVSDAYV 936

Query: 547 DAVSEEDVLSSEASLLFYERI 567
             VS E VL SEA +LFYERI
Sbjct: 937 RQVSLEKVLHSEAYILFYERI 957


>AT2G32780.1 | Symbols: UBP1, ATUBP1 | ubiquitin-specific protease 1 |
            chr2:13898431-13901870 REVERSE LENGTH=1083
          Length = 1083

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 490  QEACLYQLVSVVEHFGRAGGGHYTVY-RCARAETSDVSGDRCFNQTPRR--WFCVSDSQV 546
            ++  +Y+L  +VEH G    GHY  Y R    E  D        + P    W+  SDSQV
Sbjct: 1008 EDEPVYRLAGLVEHLGAMSRGHYVSYIRGGHKERRDSD-----TKEPNSSIWYHASDSQV 1062

Query: 547  DAVSEEDVLSSEASLLFYERI 567
               S E+VL SEA +LFYERI
Sbjct: 1063 RPASLEEVLRSEAYILFYERI 1083


>AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 |
           chr4:6523657-6528058 REVERSE LENGTH=923
          Length = 923

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 87/204 (42%), Gaps = 22/204 (10%)

Query: 64  GLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMP------LAAS 117
           GL NL N CF+N  LQ LA            I E   QD  + + ++  P      LA +
Sbjct: 305 GLSNLGNTCFMNSALQCLAHT--------PPIVEYFLQDYSD-DINRDNPLGMCGELAIA 355

Query: 118 LVALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGC 177
              LL++L S SG   + +PR     ++ + P F+  +Q D+ E    LL  L E+    
Sbjct: 356 FGDLLKKLWS-SGRNAV-APRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKV 413

Query: 178 YAPNVSSLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQISM 237
                  L D  +  +  +A  +  W   + R   + +    G   S+L C  C  +IS+
Sbjct: 414 KRKPYIELKDSDSRPDDEVA--EELWNYHKARNDSVIVDVCQGQYKSTLVCPVC-GKISI 470

Query: 238 NFEHFDCL--PLSPVLSDSFTIRV 259
            F+ F  L  PL   L+ S TI V
Sbjct: 471 TFDPFMYLSVPLPSTLTRSMTITV 494


>AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 22/204 (10%)

Query: 64  GLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMP------LAAS 117
           GL NL N CF+N  LQ LA            I E   QD  + + ++  P      LA +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHT--------PPIVEYFLQDYSD-DINRDNPLGMCGELAIA 354

Query: 118 LVALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGC 177
              LL++L S SG   + +PR     ++ + P F+  +Q D+ E    LL  L E+    
Sbjct: 355 FGDLLKKLWS-SGRNSV-APRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKV 412

Query: 178 YAPNVSSLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQISM 237
                  L D  +  +  +A  +  W   + R   + +    G   S+L C +C  +IS+
Sbjct: 413 KRKPYIELKDSDSRPDDEVA--EELWNYHKARNDSVIVDVCQGQYKSTLVCPAC-GKISI 469

Query: 238 NFEHFDCL--PLSPVLSDSFTIRV 259
            F+ F  L  PL   L+ S T+ V
Sbjct: 470 TFDPFMYLSVPLPSTLTRSMTVTV 493


>AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 22/204 (10%)

Query: 64  GLHNLRNNCFLNVVLQALASCFCFHGFLHRVIAECGTQDMVESETDQSMP------LAAS 117
           GL NL N CF+N  LQ LA            I E   QD  + + ++  P      LA +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHT--------PPIVEYFLQDYSD-DINRDNPLGMCGELAIA 354

Query: 118 LVALLQELSSVSGEKVILSPREIMLAMSLYNPDFNLTDQQDAAEAFLHLLCSLREEFGGC 177
              LL++L S SG   + +PR     ++ + P F+  +Q D+ E    LL  L E+    
Sbjct: 355 FGDLLKKLWS-SGRNSV-APRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKV 412

Query: 178 YAPNVSSLADVCASNNRIIAPIQRDWKSEQERWKQLFLGPFDGILGSSLTCRSCSSQISM 237
                  L D  +  +  +A  +  W   + R   + +    G   S+L C +C  +IS+
Sbjct: 413 KRKPYIELKDSDSRPDDEVA--EELWNYHKARNDSVIVDVCQGQYKSTLVCPAC-GKISI 469

Query: 238 NFEHFDCL--PLSPVLSDSFTIRV 259
            F+ F  L  PL   L+ S T+ V
Sbjct: 470 TFDPFMYLSVPLPSTLTRSMTVTV 493