Miyakogusa Predicted Gene

Lj4g3v2775620.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2775620.1 tr|G1MDL8|G1MDL8_AILME Ubiquitin
carboxyl-terminal hydrolase OS=Ailuropoda melanoleuca GN=USP30
PE=3,25.98,1e-17,UCH_2_2,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2, conserved site; UCH,Peptidase C19, u,CUFF.51620.1
         (1722 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV777197 similar to UniRef100_A7PKY6 Cluster: Ubiquitin...   194   1e-48
gnl|LJGI|AV411271 similar to UniRef100_A6M316 Cluster: PpiC-type...   163   5e-39

>gnl|LJGI|AV777197 similar to UniRef100_A7PKY6 Cluster: Ubiquitin carboxyl-terminal
            hydrolase; n=1; Vitis vinifera|Rep: Ubiquitin
            carboxyl-terminal hydrolase - Vitis vinifera (Grape),
            partial (5%)
          Length = 429

 Score =  194 bits (98), Expect = 1e-48
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1625 cagactctcaagtggatgctgtttcagaggaagatgttctatctagtgaggcaagcttgc 1684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  cagactctcaagtggatgctgtttcagaggaagatgttctatctagtgaggcaagcttgc 370

                                                  
Query: 1685 ttttctatgagagaattccaaagaactgtatttgagca 1722
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 369  ttttctatgagagaattccaaagaactgtatttgagca 332


>gnl|LJGI|AV411271 similar to UniRef100_A6M316 Cluster: PpiC-type peptidyl-prolyl
           cis-trans isomerase; n=1; Clostridium beijerinckii NCIMB
           8052|Rep: PpiC-type peptidyl-prolyl cis-trans isomerase
           - Clostridium beijerinckii NCIMB 8052, partial (5%)
          Length = 430

 Score =  163 bits (82), Expect = 5e-39
 Identities = 135/152 (88%), Gaps = 3/152 (1%)
 Strand = Plus / Plus

                                                                       
Query: 90  cgcactcaaggaaaccaaagcgaaaaccttgctatggtcatctggaac---aagaagaag 146
           |||| ||||||||  |||||| ||| | ||||||||||| ||||||||   |||| | ||
Sbjct: 52  cgcattcaaggaaggcaaagcaaaatcattgctatggtcctctggaactgcaagaggtag 111

                                                                       
Query: 147 taatagcagcaacttggataataagaaaccgctcctagtccctggtttacacaatctccg 206
           ||||||||||||||| || ||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 112 taatagcagcaacttagagaatgagaaaccgctcttagtccctggtttgcacaatctccg 171

                                           
Query: 207 caacaattgcttcctcaacgttgttttgcagg 238
           ||||||||||||||||||||||||||||||||
Sbjct: 172 caacaattgcttcctcaacgttgttttgcagg 203