Miyakogusa Predicted Gene

Lj4g3v2730370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2730370.1 Non Chatacterized Hit- tr|D5AAI4|D5AAI4_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,53.85,6e-17,seg,NULL,CUFF.51612.1
         (557 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67840.1 | Symbols: CSK | chloroplast sensor kinase | chr1:25...   499   e-141
AT1G67840.2 | Symbols: CSK | chloroplast sensor kinase | chr1:25...   338   5e-93

>AT1G67840.1 | Symbols: CSK | chloroplast sensor kinase |
           chr1:25434156-25436839 FORWARD LENGTH=611
          Length = 611

 Score =  499 bits (1284), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 278/484 (57%), Positives = 349/484 (72%), Gaps = 34/484 (7%)

Query: 86  SPVEFTQRVEKD----GVVLPSPDFHALCLQQLNLFRRIV-PEALLSVYVRPAGSYVMDR 140
           +PVEFTQ +EKD     ++LPSPDF  LCL+QL+LFR+IV P A+LS+YVRPAGSYVMDR
Sbjct: 93  TPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVDPNAVLSIYVRPAGSYVMDR 152

Query: 141 LELRRVALYPGEAELEVDGIVMLVGHFNVPAGLRAAETVLTDLQVKIVPECKAVVLPMVK 200
           LELRRV  YP    +    +V+LVG+F +PAGLRAAE  L+  QV++V + +A V PMVK
Sbjct: 153 LELRRVTCYPS---VNAGDVVILVGNFGIPAGLRAAEASLSSQQVELVSKHRAAVFPMVK 209

Query: 201 HPFVVGFLVAELP-----PVEMGTREEPQSDGWDNRRISGGEVYSLPPFLDLDKKSREIQ 255
           HPFVVGFLVAELP       E    E+P      N+ +S  E Y+LP        S   +
Sbjct: 210 HPFVVGFLVAELPVEAEEEEEEEEEEKPHGV---NQFLSPEEAYALP-------ASANTK 259

Query: 256 TFRIKDEPVAMHNFTSEQRSIAVNISQSLAVAYVMDQKAKLLQQSTWQNNVRINNLVEQI 315
           + R+K   V +  FT EQRS A+NIS++LA+AYVMDQK  LLQQS+WQNNVR++ LVEQI
Sbjct: 260 SPRVKLPSVKV--FTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNVRMSKLVEQI 317

Query: 316 RGPLASIQTLSKILSMQTTKSQISYDIVEDILVQGDRLRDVLQQLQDAVHLTKANIVRYN 375
           RGPL++++TLSK+LS  T ++QIS+DIVED++VQGD+++D L++LQDAVHLTKANIVR+N
Sbjct: 318 RGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHLTKANIVRHN 377

Query: 376 EEAIQKMNGSTHILAESMRSQLLDGSSRDGSANKINKSGEPLSISAASQDIEMXXXXXXX 435
           EEA++K+N  TH   E+ RS+       DGS      S   LS+ +   D EM       
Sbjct: 378 EEALKKIN-KTH--NETRRSKYEHKDPIDGS----QISSTRLSLGSGLDDSEMPMPPLAL 430

Query: 436 XXXR-HGIRPCNVSEVLEDLVDSARPLAQNQKRTVELSQFSSPLLAAVEEPALHQAFSNL 494
              + H IRPC++S VL D+V++ RPLA  Q+R VEL + S+ L  AVEEPAL QA SNL
Sbjct: 431 APLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEPALRQALSNL 490

Query: 495 IEGALLRTHVGGKVGIVSTVAPAGGTLVLIDDDGPDMHYMTQTHSLTPYGQELLSD-MVE 553
           IEGALLRTHVGGKV I+ST APAGG+LV+IDDDGPDM YMTQ HSLTP+G ELLS+ MVE
Sbjct: 491 IEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGAELLSENMVE 550

Query: 554 DNMT 557
           DNMT
Sbjct: 551 DNMT 554


>AT1G67840.2 | Symbols: CSK | chloroplast sensor kinase |
           chr1:25434156-25436216 FORWARD LENGTH=445
          Length = 445

 Score =  338 bits (868), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/350 (54%), Positives = 249/350 (71%), Gaps = 26/350 (7%)

Query: 86  SPVEFTQRVEKD----GVVLPSPDFHALCLQQLNLFRRIV-PEALLSVYVRPAGSYVMDR 140
           +PVEFTQ +EKD     ++LPSPDF  LCL+QL+LFR+IV P A+LS+YVRPAGSYVMDR
Sbjct: 93  TPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVDPNAVLSIYVRPAGSYVMDR 152

Query: 141 LELRRVALYPGEAELEVDGIVMLVGHFNVPAGLRAAETVLTDLQVKIVPECKAVVLPMVK 200
           LELRRV  YP    +    +V+LVG+F +PAGLRAAE  L+  QV++V + +A V PMVK
Sbjct: 153 LELRRVTCYPS---VNAGDVVILVGNFGIPAGLRAAEASLSSQQVELVSKHRAAVFPMVK 209

Query: 201 HPFVVGFLVAELPPVEMGTREEPQSDGWD--NRRISGGEVYSLPPFLDLDKKSREIQTFR 258
           HPFVVGFLVAELP       EE + +     N+ +S  E Y+LP        S   ++ R
Sbjct: 210 HPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP-------ASANTKSPR 262

Query: 259 IKDEPVAMHNFTSEQRSIAVNISQSLAVAYVMDQKAKLLQQSTWQNNVRINNLVEQIRGP 318
           +K   V +  FT EQRS A+NIS++LA+AYVMDQK  LLQQS+WQNNVR++ LVEQIRGP
Sbjct: 263 VKLPSVKV--FTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNVRMSKLVEQIRGP 320

Query: 319 LASIQTLSKILSMQTTKSQISYDIVEDILVQGDRLRDVLQQLQDAVHLTKANIVRYNEEA 378
           L++++TLSK+LS  T ++QIS+DIVED++VQGD+++D L++LQDAVHLTKANIVR+NEEA
Sbjct: 321 LSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHLTKANIVRHNEEA 380

Query: 379 IQKMNGSTHILAESMRSQLLDGSSRDGSANKINKSGEPLSISAASQDIEM 428
           ++K+N  TH   E+ RS+       DGS      S   LS+ +   D EM
Sbjct: 381 LKKIN-KTH--NETRRSKYEHKDPIDGS----QISSTRLSLGSGLDDSEM 423