Miyakogusa Predicted Gene

Lj4g3v2604780.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2604780.2 Non Chatacterized Hit- tr|D7LGY0|D7LGY0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,27.42,4e-18,seg,NULL; DUF688,Protein of unknown function
DUF688,CUFF.51314.2
         (569 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29240.1 | Symbols:  | Protein of unknown function (DUF688) |...   115   6e-26
AT2G30990.3 | Symbols:  | Protein of unknown function (DUF688) |...   113   3e-25
AT2G30990.2 | Symbols:  | Protein of unknown function (DUF688) |...    96   8e-20
AT2G30990.1 | Symbols:  | Protein of unknown function (DUF688) |...    96   8e-20
AT4G18630.1 | Symbols:  | Protein of unknown function (DUF688) |...    91   3e-18
AT5G45850.1 | Symbols:  | Protein of unknown function (DUF688) |...    89   1e-17
AT2G34170.2 | Symbols:  | Protein of unknown function (DUF688) |...    70   4e-12
AT2G34170.1 | Symbols:  | Protein of unknown function (DUF688) |...    70   4e-12

>AT1G29240.1 | Symbols:  | Protein of unknown function (DUF688) |
           chr1:10217023-10218924 REVERSE LENGTH=577
          Length = 577

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 169/397 (42%), Gaps = 85/397 (21%)

Query: 2   MNERKLNINAPLMSMRRYSGTSPSKTEQKRNTLEKQQAIPHYKSDTTL------------ 49
           M ERKLN + PL+S RR   T+      +RN   K      Y S T+             
Sbjct: 1   MEERKLNFSVPLLSTRRMQKTA--GVSVRRN---KSNNFTDYDSKTSECPSVPVLVPYMM 55

Query: 50  ---DQVTEPVTVPFNWEHIPGKPKGND--------------------------------- 73
              D+VTEP +VPF WE  PG+ KGND                                 
Sbjct: 56  GLDDEVTEPASVPFTWEQAPGRLKGNDFKPQVCVLMKEEEQVFTPCLPPGKAVDANMTRL 115

Query: 74  ----GSIKNVEXXXXXXAYSDALETLSSTESFSMKCSVSGISGLDNLDANKCETGTSSTD 129
               G             +SDAL+TLS  +SFS   S+SG+S    ++  K        D
Sbjct: 116 QSSKGKQVEESDDDEDDVFSDALDTLSPKDSFSFNNSISGVSEYGGVETKK------PLD 169

Query: 130 KEAQDFMMSRFLTAANAMTLHPPQHVS-RKKSVLVEQPR-DFTKLVRVEKESFVNRHITD 187
            +++DFMMSRFL AA AMT+    + S RK S  + +P     +LV  EK+   NR+   
Sbjct: 170 AQSRDFMMSRFLPAAKAMTVEQSHYASNRKPSTFMAEPTIQIRELVPGEKQQTPNRYDVS 229

Query: 188 IVPXXXX------XXXXXXXXXXXXXXXAHMSAKGCGLFPRSCIRNSLCLLNQVPGTKMV 241
           IVP                         A++S +GCG+ P+ C ++SL +LN VPG K  
Sbjct: 230 IVPSYYYHQDIDDEESKVGEEDDEVSEYAYLSKRGCGMLPQLCFKDSLGMLNTVPGFKAK 289

Query: 242 NQFPMFS-SYEVGKSKENSHIHSSRPAPAIKKAWDAIHKSKSSSGAAPPDMHGISSFRSN 300
           +  P+ S S++  KS + + +   R     K A D++ K K S     P +H      SN
Sbjct: 290 HNSPITSPSHDQVKSSKVAQL-KYRFQSVKKLALDSVSKHKLSGKVHSP-VHP-----SN 342

Query: 301 ESKRYAYSGELKQVGRISS-FRYSRTIAASGTSSFRS 336
             K  + S  +    R SS +R+SR +     S FRS
Sbjct: 343 GKKFNSESNLISAAKRSSSPYRHSRCM-----SPFRS 374



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 8/73 (10%)

Query: 500 WLCRALPLVSLKNSFPYSNQGTPLHAKRQG---NRRASSFTKWETIVKTSNMHHDHAHSS 556
           WLC  LP V+ + +   S +  P + ++Q    N R    TKWETIVKTS MH DH   S
Sbjct: 510 WLCHNLPSVTSQIT---SRRYHPFNPQKQDLTENYRNG--TKWETIVKTSYMHRDHIRYS 564

Query: 557 QELVIYKSQHSKS 569
           +ELV + S  SK+
Sbjct: 565 EELVAHTSHQSKT 577


>AT2G30990.3 | Symbols:  | Protein of unknown function (DUF688) |
           chr2:13187776-13189761 REVERSE LENGTH=563
          Length = 563

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 125/277 (45%), Gaps = 49/277 (17%)

Query: 1   MMNERKLNINAPLMSMRRYSGTSPSKTEQKRNTLEKQQAI-----PHYKSDTTLDQVTEP 55
           MM E++L+ N PL+S+RR + TS  ++E K  + +    +     P YKSD     V  P
Sbjct: 7   MMEEKQLDFNRPLISIRRPTQTS--ESESKTRSFDSVTNMIPPSPPVYKSDIKSGPVRNP 64

Query: 56  VTVPFNWEHIPGKPKGN------------------DGSIKNVE--XXXXXXAYSDALETL 95
            TVPF WEH PGKPK                     G  + VE              +T+
Sbjct: 65  GTVPFQWEHKPGKPKDERKPVLQSFVEPHFVPKLPPGRERVVELGRKPESTGADHQTKTV 124

Query: 96  SSTESFSMK-------CSVSGISGLDNLDANKCETGTSSTDKEAQDFMMSRFLTAANAMT 148
           SS++ + ++        +VSG SGLD         GT STD++ QD MM RFL AA A+T
Sbjct: 125 SSSDKYLVEDAKSNSSRAVSGASGLDGSGILVEPFGTLSTDRQTQDLMMGRFLPAAKALT 184

Query: 149 LHPPQHVSRKKSVLVEQPRDFTKLV--RVEKESFVNRHITDIVPXXXXXXXXXXXXXXXX 206
              P H++RK     E  +   K    +VE+  +  RH  D                   
Sbjct: 185 SESPPHLARKPPKPEEPVKQLMKKKQNKVEQNPYRFRHSPD-------------QEEEDG 231

Query: 207 XXXAHMSAKGCGLFPRSCIRNSLCLLNQVPGTKMVNQ 243
              + M++  CGL P+ C+R+SL LLN VP  +M  Q
Sbjct: 232 NISSMMASGVCGLLPQLCLRSSLGLLNPVPSVRMQQQ 268


>AT2G30990.2 | Symbols:  | Protein of unknown function (DUF688) |
           chr2:13187776-13189761 REVERSE LENGTH=593
          Length = 593

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 88  YSDALETLSSTESFSMKCS-VSGISGLDNLDANKCETGTSSTDKEAQDFMMSRFLTAANA 146
           Y DA +TLS TESF   CS VSG SGLD         GT STD++ QD MM RFL AA A
Sbjct: 153 YLDATDTLSRTESFFFNCSAVSGASGLDGSGILVEPFGTLSTDRQTQDLMMGRFLPAAKA 212

Query: 147 MTLHPPQHVSRKKSVLVEQPRDFTKLV--RVEKESFVNRHITDIVPXXXXXXXXXXXXXX 204
           +T   P H++RK     E  +   K    +VE+  +  RH  D                 
Sbjct: 213 LTSESPPHLARKPPKPEEPVKQLMKKKQNKVEQNPYRFRHSPD-------------QEEE 259

Query: 205 XXXXXAHMSAKGCGLFPRSCIRNSLCLLNQVPGTKMVNQ 243
                + M++  CGL P+ C+R+SL LLN VP  +M  Q
Sbjct: 260 DGNISSMMASGVCGLLPQLCLRSSLGLLNPVPSVRMQQQ 298



 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 7/75 (9%)

Query: 1  MMNERKLNINAPLMSMRRYSGTSPSKTEQKRNTLEKQQAI-----PHYKSDTTLDQVTEP 55
          MM E++L+ N PL+S+RR + TS  ++E K  + +    +     P YKSD     V  P
Sbjct: 7  MMEEKQLDFNRPLISIRRPTQTS--ESESKTRSFDSVTNMIPPSPPVYKSDIKSGPVRNP 64

Query: 56 VTVPFNWEHIPGKPK 70
           TVPF WEH PGKPK
Sbjct: 65 GTVPFQWEHKPGKPK 79


>AT2G30990.1 | Symbols:  | Protein of unknown function (DUF688) |
           chr2:13187776-13189761 REVERSE LENGTH=593
          Length = 593

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 88  YSDALETLSSTESFSMKCS-VSGISGLDNLDANKCETGTSSTDKEAQDFMMSRFLTAANA 146
           Y DA +TLS TESF   CS VSG SGLD         GT STD++ QD MM RFL AA A
Sbjct: 153 YLDATDTLSRTESFFFNCSAVSGASGLDGSGILVEPFGTLSTDRQTQDLMMGRFLPAAKA 212

Query: 147 MTLHPPQHVSRKKSVLVEQPRDFTKLV--RVEKESFVNRHITDIVPXXXXXXXXXXXXXX 204
           +T   P H++RK     E  +   K    +VE+  +  RH  D                 
Sbjct: 213 LTSESPPHLARKPPKPEEPVKQLMKKKQNKVEQNPYRFRHSPD-------------QEEE 259

Query: 205 XXXXXAHMSAKGCGLFPRSCIRNSLCLLNQVPGTKMVNQ 243
                + M++  CGL P+ C+R+SL LLN VP  +M  Q
Sbjct: 260 DGNISSMMASGVCGLLPQLCLRSSLGLLNPVPSVRMQQQ 298



 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 7/75 (9%)

Query: 1  MMNERKLNINAPLMSMRRYSGTSPSKTEQKRNTLEKQQAI-----PHYKSDTTLDQVTEP 55
          MM E++L+ N PL+S+RR + TS  ++E K  + +    +     P YKSD     V  P
Sbjct: 7  MMEEKQLDFNRPLISIRRPTQTS--ESESKTRSFDSVTNMIPPSPPVYKSDIKSGPVRNP 64

Query: 56 VTVPFNWEHIPGKPK 70
           TVPF WEH PGKPK
Sbjct: 65 GTVPFQWEHKPGKPK 79


>AT4G18630.1 | Symbols:  | Protein of unknown function (DUF688) |
           chr4:10257178-10258734 FORWARD LENGTH=479
          Length = 479

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 120/284 (42%), Gaps = 53/284 (18%)

Query: 2   MNERKLNINAPLMSMRRYSGT--SPSKTEQKRNTLE----------KQQAIPHYKSDTTL 49
           M  +KLN+ APL S+RR        S+ E K+ T+           KQ+       D + 
Sbjct: 1   MEGKKLNLYAPLPSIRRIPSMIERSSELENKKTTITRPELRSCPSTKQETPVFVLPDQSF 60

Query: 50  DQVTEPVTVPFNWEHIPGKPKGNDGSI-----KNVEXXXXXXAYSDALETLSSTESFSMK 104
           D +TEP ++PF WE IPGKPK +  ++                  + L+T+SS  SFS+ 
Sbjct: 61  DHLTEPASIPFMWEQIPGKPKDDMATLIQESGLLETDDEEEDEVDEDLDTVSSNVSFSVN 120

Query: 105 CSVSGISGLDNL-DANKCETGTSSTDKEAQDFMMSRFLTAANAMTLHPPQ-HVSRKKSVL 162
           CS SG+S ++   + + C+  +    +E+ D MMSRFL AA AM L   Q H S   S  
Sbjct: 121 CSTSGVSEIEKTGERSDCDEKS----RESLDLMMSRFLPAAKAMALQTHQKHQSSYNS-- 174

Query: 163 VEQPRDFTKLVRVEKESFVNRHITDIVPXXXXXXXXXXXXXXXXXXX------------- 209
            EQ     KL+   +E+ V R  + +V                                 
Sbjct: 175 SEQ-----KLITQNREALVARQRSQLVAEHEHFAIVQSLYDDLNIDDDTEDDENDDDGDD 229

Query: 210 ----------AHMSAKGCGLFPRSCIRNSLCLLNQVPGTKMVNQ 243
                     A ++ K CG  PR C +NS   LN VP   + N+
Sbjct: 230 YGHVDHKIYPAEVTKKACGFLPRLCAKNSFKFLNPVPLDSVSNR 273



 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 500 WLCRAL-PLVSLKNSFPYSNQGTPLHAKRQGNRRASSFTKWETIVKTSNMHHDHAHSSQE 558
           WL R L P V   N  PY      +  K+  N+     TKWETIVKTS +H+DHA  SQE
Sbjct: 413 WLGRTLLPPV---NPRPYGVVLGQVGIKKL-NQEVLESTKWETIVKTSYVHNDHARYSQE 468

Query: 559 LVIYKSQH 566
           L++Y S+ 
Sbjct: 469 LIVYPSRQ 476


>AT5G45850.1 | Symbols:  | Protein of unknown function (DUF688) |
           chr5:18599998-18601435 REVERSE LENGTH=445
          Length = 445

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 27/178 (15%)

Query: 2   MNERKLNINAPLMSMRRYSGTSPSKTEQKRNTLEK-----------------QQAIPHYK 44
           M E+KLN++AP +S+RR   T P    +  NT +K                  + +    
Sbjct: 1   MEEKKLNLDAPFLSVRRVP-TKPDDPNESENTKKKTMTTRRREIKDSCQETENEILIRLL 59

Query: 45  SDTTLDQVTEPVTVPFNWEHIPGKPKGNDGSIKNVEXXXXXXAYSDALETLSSTESFSMK 104
            D + + V EP +VPF WE  PGKPK     ++  +          A+E +SST SFS+ 
Sbjct: 60  QDQSFEHVMEPSSVPFKWEQTPGKPKDKKNLVEESDLIK-------AMEMVSSTASFSVN 112

Query: 105 CSVSGISGLDNLDANKCETGTSSTDK--EAQDFMMSRFLTAANAMTLHPPQHVSRKKS 160
           CS SG+S  +N       +  S  D   E +D +MSRFL AA A++L   +  SR K+
Sbjct: 113 CSSSGVSEFENNGDGDRSSNVSRDDVILEYRDLIMSRFLPAAEAISLKMKKEASRVKA 170


>AT2G34170.2 | Symbols:  | Protein of unknown function (DUF688) |
           chr2:14428298-14430051 FORWARD LENGTH=523
          Length = 523

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 33/247 (13%)

Query: 2   MNERKLNINAPLMSMRRYSGTSPSKTEQKRNTLEKQQAIPHYKSDTTLDQVTEPVTV--- 58
           M E++LN +APL+S RR           K++ +  ++ +P   +D +    +  V+V   
Sbjct: 1   MAEKQLNFDAPLLSTRR----------MKKSAISVRRNMPKQLTDESKTSESLSVSVLVQ 50

Query: 59  PFNWEHIPGKPKGNDGSIKNVEXXXXXXAYSDALETLSSTESFSMKCSVSGISGLDNLDA 118
               + +P  P  +    +  E       +SDAL+TLS      +K S+SG  G++ +  
Sbjct: 51  DMGLDQVPDSPLESKHVEEEAEESEDDDVFSDALDTLS------LKQSISGGGGVEAMKP 104

Query: 119 NKCETGTSSTDKEAQDFMMSRFLTAANAMTL-HPPQHVSRKKSV-LVEQP-RDFTKLVRV 175
                   S   E   FM+ RFL AA ++TL  PPQ+  +++ + L+ +P R    +V  
Sbjct: 105 --------SMPSEDPQFMLDRFLPAAKSLTLEQPPQYSWKRQPLPLMSEPMRQIRDIVPA 156

Query: 176 EKESFVNRHITDIVPXXXX--XXXXXXXXXXXXXXXAHMSAKGCGLF-PRSCIRNSLCLL 232
           E  +   R+ +   P                      ++S +GCG+  P+ C +NSL +L
Sbjct: 157 ENRATPTRYESSFTPSYYQDIDDEESEEDSDDDEVSEYLSKRGCGMMSPQICFKNSLGML 216

Query: 233 NQVPGTK 239
           + V G K
Sbjct: 217 SSVNGLK 223


>AT2G34170.1 | Symbols:  | Protein of unknown function (DUF688) |
           chr2:14428298-14430051 FORWARD LENGTH=523
          Length = 523

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 33/247 (13%)

Query: 2   MNERKLNINAPLMSMRRYSGTSPSKTEQKRNTLEKQQAIPHYKSDTTLDQVTEPVTV--- 58
           M E++LN +APL+S RR           K++ +  ++ +P   +D +    +  V+V   
Sbjct: 1   MAEKQLNFDAPLLSTRR----------MKKSAISVRRNMPKQLTDESKTSESLSVSVLVQ 50

Query: 59  PFNWEHIPGKPKGNDGSIKNVEXXXXXXAYSDALETLSSTESFSMKCSVSGISGLDNLDA 118
               + +P  P  +    +  E       +SDAL+TLS      +K S+SG  G++ +  
Sbjct: 51  DMGLDQVPDSPLESKHVEEEAEESEDDDVFSDALDTLS------LKQSISGGGGVEAMKP 104

Query: 119 NKCETGTSSTDKEAQDFMMSRFLTAANAMTL-HPPQHVSRKKSV-LVEQP-RDFTKLVRV 175
                   S   E   FM+ RFL AA ++TL  PPQ+  +++ + L+ +P R    +V  
Sbjct: 105 --------SMPSEDPQFMLDRFLPAAKSLTLEQPPQYSWKRQPLPLMSEPMRQIRDIVPA 156

Query: 176 EKESFVNRHITDIVPXXXX--XXXXXXXXXXXXXXXAHMSAKGCGLF-PRSCIRNSLCLL 232
           E  +   R+ +   P                      ++S +GCG+  P+ C +NSL +L
Sbjct: 157 ENRATPTRYESSFTPSYYQDIDDEESEEDSDDDEVSEYLSKRGCGMMSPQICFKNSLGML 216

Query: 233 NQVPGTK 239
           + V G K
Sbjct: 217 SSVNGLK 223