Miyakogusa Predicted Gene

Lj4g3v2289250.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2289250.1 gene.g56609.t1.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06778.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    64   3e-11

>AT3G06778.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr3:2140249-2141437 REVERSE LENGTH=229
          Length = 229

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 12/88 (13%)

Query: 1   MRERFKEEAKVVENCMRTNS---MSRK--ESPLSNPVAYLQRSKSMHRFDKETPVFNPSD 55
           +R++F+EE  V+E C++TNS   M  +  E+P   PV  + +    +R +KE+PVFNPSD
Sbjct: 140 IRDKFREENMVIERCLKTNSAFFMGNRTNETP---PVYGIPK---QNRINKESPVFNPSD 193

Query: 56  YLYQGYPHLREHVFK-NSSTFWYLQTTS 82
           Y   GYPH+R  VF  N S+ W + T S
Sbjct: 194 YRLWGYPHVRNRVFDYNLSSDWNMFTRS 221