Miyakogusa Predicted Gene

Lj4g3v2249050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2249050.1 tr|Q6PP98|Q6PP98_SOYBN Mitochondrial pyruvate
dehydrogenase kinase isoform 2 OS=Glycine max GN=Gma.5,86.47,0,ATPase
domain of HSP90 chaperone/DNA topoisomerase II/histidine
kinase,ATPase-like, ATP-binding doma,CUFF.50554.1
         (260 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06483.1 | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kina...   424   e-119

>AT3G06483.1 | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase
           | chr3:1990727-1992581 REVERSE LENGTH=366
          Length = 366

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/261 (78%), Positives = 234/261 (89%), Gaps = 3/261 (1%)

Query: 3   DEKEFTEMIKAIKVRHNNVIPTMASGVQQLK--IVYEDPDEIDQFLDRFYMSRIGIRMRI 60
           DEK+FT+MIKA+KVRHNNV+P MA GV QLK  +   + DEI QFLDRFY+SRIGIRM I
Sbjct: 106 DEKDFTQMIKAVKVRHNNVVPMMALGVNQLKKGMNSGNLDEIHQFLDRFYLSRIGIRMLI 165

Query: 61  GQHVELHNPHPLPNCVGYIHTHLSPVDVAKNASEDARAMCCREYGSAPDVHIYGDPDFTF 120
           GQHVELHNP+P  + VGYIHT +SP++VA+NASEDAR++C REYGSAP+++IYGDP FTF
Sbjct: 166 GQHVELHNPNPPLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDPSFTF 225

Query: 121 PYVPAHLHLMVFELVKNSLRAVEERFMDSDKVAPPVRIVVADGIEDVTIKVSDEGGGIPR 180
           PYVP HLHLM++ELVKNSLRAV+ERF+DSD+VAPP+RI+VADGIEDVTIKVSDEGGGI R
Sbjct: 226 PYVPTHLHLMMYELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGGGIAR 285

Query: 181 SGLPKIFTYVYSTAENPLDEHSEFGTAD-NVTMAGYGYGLPISRLYARYFGGDLQVISME 239
           SGLP+IFTY+YSTA NPL+E  + G AD  VTMAGYGYGLPISRLYARYFGGDLQ+ISME
Sbjct: 286 SGLPRIFTYLYSTARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQIISME 345

Query: 240 GYGTDAYLHLCRLGDSQEPLP 260
           GYGTDAYLHL RLGDSQEPLP
Sbjct: 346 GYGTDAYLHLSRLGDSQEPLP 366