Miyakogusa Predicted Gene

Lj4g3v1983640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983640.1 Non Chatacterized Hit- tr|B4FKH4|B4FKH4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,58,7e-18,YbaB_DNA_bd,YbaB-like DNA-binding protein; no
description,YbaB-like DNA-binding protein; YbaB-like,Y,CUFF.50070.1
         (191 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g25500.1                                                       271   3e-73
Glyma06g31120.1                                                       265   3e-71
Glyma12g25500.2                                                       254   4e-68
Glyma06g31120.2                                                       187   8e-48

>Glyma12g25500.1 
          Length = 196

 Score =  271 bits (693), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 155/196 (79%), Gaps = 5/196 (2%)

Query: 1   MASTVSLTGQLSNIHGASERXXXXXXXXXXXXXXXXANVVDMRPLSQRGHKKVGRD-RCF 59
           M +T  +TG LSN  G  +                 +N+VDM+ LS+ G +KVG D RCF
Sbjct: 1   MTTTPCVTGALSNAVGFRDWKKHVPLSASLCKLSFNSNIVDMKILSRCGCQKVGNDQRCF 60

Query: 60  RVYALFGGKKEN----NDGDSKTGMLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 115
           R+YALFGGKK+N    +D  SK G+LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD
Sbjct: 61  RLYALFGGKKDNSGKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 116 GYCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMSG 175
           GYCE EL+KVTLSGNQQP+RT ITEAAMELGPEKLSLL+TEAYKDAHQKSVQAMKERM+ 
Sbjct: 121 GYCEGELVKVTLSGNQQPVRTEITEAAMELGPEKLSLLITEAYKDAHQKSVQAMKERMND 180

Query: 176 LAQSLGMPPGLGEGLK 191
           LAQSLGMPPGL EGLK
Sbjct: 181 LAQSLGMPPGLSEGLK 196


>Glyma06g31120.1 
          Length = 195

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 154/196 (78%), Gaps = 6/196 (3%)

Query: 1   MASTVSLTGQLSNIHGASERXXXXXXXXXXXXXXXXANVVDMRPLSQRGHKKVGR-DRCF 59
           M +  SLTG LSN  G S+                 +N+VDM+ +S+ G +KVG   RCF
Sbjct: 1   MTTAPSLTGPLSNAVGFSDWKKHAPLSASLCKLSSSSNIVDMK-ISRCGCRKVGHGQRCF 59

Query: 60  RVYALFGGKKENN----DGDSKTGMLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 115
           R+YALFGGKK+NN    D  SK G+LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD
Sbjct: 60  RLYALFGGKKDNNGKSDDVPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 119

Query: 116 GYCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMSG 175
           GYCE EL+KVTLSGNQQP+RT ITEAAMELG EKLSLL+TEAYKDAHQKSVQAMKERM+ 
Sbjct: 120 GYCEGELVKVTLSGNQQPVRTEITEAAMELGSEKLSLLITEAYKDAHQKSVQAMKERMND 179

Query: 176 LAQSLGMPPGLGEGLK 191
           LAQSLGMPPGL EGLK
Sbjct: 180 LAQSLGMPPGLSEGLK 195


>Glyma12g25500.2 
          Length = 155

 Score =  254 bits (649), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 139/155 (89%), Gaps = 5/155 (3%)

Query: 42  MRPLSQRGHKKVGRD-RCFRVYALFGGKKEN----NDGDSKTGMLGNMQNLYETVKKAQM 96
           M+ LS+ G +KVG D RCFR+YALFGGKK+N    +D  SK G+LGNMQNLYETVKKAQM
Sbjct: 1   MKILSRCGCQKVGNDQRCFRLYALFGGKKDNSGKSDDAPSKAGILGNMQNLYETVKKAQM 60

Query: 97  VVQVEAVRVQKELAAAEFDGYCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTE 156
           VVQVEAVRVQKELAAAEFDGYCE EL+KVTLSGNQQP+RT ITEAAMELGPEKLSLL+TE
Sbjct: 61  VVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPVRTEITEAAMELGPEKLSLLITE 120

Query: 157 AYKDAHQKSVQAMKERMSGLAQSLGMPPGLGEGLK 191
           AYKDAHQKSVQAMKERM+ LAQSLGMPPGL EGLK
Sbjct: 121 AYKDAHQKSVQAMKERMNDLAQSLGMPPGLSEGLK 155


>Glyma06g31120.2 
          Length = 162

 Score =  187 bits (474), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 100/153 (65%), Positives = 113/153 (73%), Gaps = 6/153 (3%)

Query: 1   MASTVSLTGQLSNIHGASERXXXXXXXXXXXXXXXXANVVDMRPLSQRGHKKVGR-DRCF 59
           M +  SLTG LSN  G S+                 +N+VDM+ +S+ G +KVG   RCF
Sbjct: 1   MTTAPSLTGPLSNAVGFSDWKKHAPLSASLCKLSSSSNIVDMK-ISRCGCRKVGHGQRCF 59

Query: 60  RVYALFGGKKENN----DGDSKTGMLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 115
           R+YALFGGKK+NN    D  SK G+LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD
Sbjct: 60  RLYALFGGKKDNNGKSDDVPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 119

Query: 116 GYCEDELIKVTLSGNQQPIRTIITEAAMELGPE 148
           GYCE EL+KVTLSGNQQP+RT ITEAAMELG E
Sbjct: 120 GYCEGELVKVTLSGNQQPVRTEITEAAMELGSE 152