Miyakogusa Predicted Gene

Lj4g3v1983640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983640.1 Non Characterized Hit- tr|B4FKH4|B4FKH4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,58,7e-18,YbaB_DNA_bd,YbaB-like DNA-binding protein; no
description,YbaB-like DNA-binding protein; YbaB-like,Y,CUFF.50070.1
         (191 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0380s0040.1 | YbaB/EbfC DNA-binding family protein | HC | s...   248   2e-66
Medtr4g130730.1 | YbaB/EbfC DNA-binding family protein | HC | ch...   238   2e-63

>Medtr0380s0040.1 | YbaB/EbfC DNA-binding family protein | HC |
           scaffold0380:7921-14026 | 20130731
          Length = 188

 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 132/196 (67%), Positives = 151/196 (77%), Gaps = 13/196 (6%)

Query: 1   MASTVSLTGQLSNIHGASERXXXXXXXXXXXXXXXXANVVDMRPLS--QRGHKKVGRDR- 57
           MAS VSL+  +   H                     +N+VD +  S  +RG KKVG +R 
Sbjct: 1   MASMVSLSNAIGLCH--------TKNTLSLRKLNSNSNIVDTKIFSGRRRGCKKVGDERR 52

Query: 58  CFRVYALFGGKKE--NNDGDSKTGMLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 115
           CFR+Y LFGGKK+  ++D  SK G+LGNMQNL+ETVKKAQMVVQVEAVRVQKELAAAEFD
Sbjct: 53  CFRLYGLFGGKKDEKSDDAPSKAGVLGNMQNLFETVKKAQMVVQVEAVRVQKELAAAEFD 112

Query: 116 GYCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMSG 175
           GYCE EL+KVTLSGNQQP+RT ITEAAMELG EKLSLL+TEAYK+AHQ+SVQAMKERM+ 
Sbjct: 113 GYCEGELVKVTLSGNQQPLRTEITEAAMELGSEKLSLLITEAYKEAHQRSVQAMKERMND 172

Query: 176 LAQSLGMPPGLGEGLK 191
           LAQSLGMPPGLGEGLK
Sbjct: 173 LAQSLGMPPGLGEGLK 188


>Medtr4g130730.1 | YbaB/EbfC DNA-binding family protein | HC |
           chr4:54468512-54472630 | 20130731
          Length = 191

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/183 (70%), Positives = 143/183 (78%), Gaps = 7/183 (3%)

Query: 1   MASTVSLTGQLSNIHGASERXXXXXXXXXXXXXXXXANVVDMRPLSQRGHKKVGRD-RCF 59
           MA TVSLTG   +IH +++                 ANVVDMR +S RG +KVG + R F
Sbjct: 1   MAFTVSLTG---HIHASTQCTNLNSLSSSLCNLSSSANVVDMRLVSPRGLQKVGSNHRNF 57

Query: 60  RVYALFGGKKENNDGDSKTGMLG---NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDG 116
           RV+ALFGGKK+N  GD+K GMLG   NMQNL+ETVKKAQ VVQVE+ R+QKELAAAEFDG
Sbjct: 58  RVHALFGGKKDNESGDNKGGMLGQLGNMQNLFETVKKAQAVVQVESSRIQKELAAAEFDG 117

Query: 117 YCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMSGL 176
           YCE ELIKVTLSGNQQP+RT ITEAAMELG EKLSLLVTEAYKDAHQKSVQAMKERMS L
Sbjct: 118 YCEGELIKVTLSGNQQPVRTQITEAAMELGSEKLSLLVTEAYKDAHQKSVQAMKERMSDL 177

Query: 177 AQS 179
           AQS
Sbjct: 178 AQS 180