Miyakogusa Predicted Gene

Lj4g3v1983640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983640.1 Non Chatacterized Hit- tr|B4FKH4|B4FKH4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,58,7e-18,YbaB_DNA_bd,YbaB-like DNA-binding protein; no
description,YbaB-like DNA-binding protein; YbaB-like,Y,CUFF.50070.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30620.1 | Symbols:  | Uncharacterised BCR, YbaB family COG07...   222   1e-58
AT2G24020.1 | Symbols:  | Uncharacterised BCR, YbaB family COG07...   221   2e-58
AT2G24020.2 | Symbols:  | Uncharacterised BCR, YbaB family COG07...   221   2e-58

>AT4G30620.1 | Symbols:  | Uncharacterised BCR, YbaB family COG0718
           | chr4:14948724-14950035 REVERSE LENGTH=180
          Length = 180

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 121/138 (87%), Gaps = 3/138 (2%)

Query: 56  DRCFRVYALFGGKKENN--DGDSKTGMLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAE 113
           +R  RV  LFGG K++N  DG SK G+LGNMQNLYETVKKAQMVVQVEAVRVQKELA AE
Sbjct: 44  NRSLRVNGLFGGGKKDNKEDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAVAE 103

Query: 114 FDGYCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERM 173
           FDGYC+ EL+KVTLSGNQQPIRT IT+AAMELG EKLSLLVTEAYKDAH KSV AMKERM
Sbjct: 104 FDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKERM 163

Query: 174 SGLAQSLGMPPGLGEGLK 191
           S LAQSLGMPPGL +GLK
Sbjct: 164 SDLAQSLGMPPGL-DGLK 180


>AT2G24020.1 | Symbols:  | Uncharacterised BCR, YbaB family COG0718
           | chr2:10217869-10219269 REVERSE LENGTH=182
          Length = 182

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 118/138 (85%), Gaps = 3/138 (2%)

Query: 57  RCFRVYALFGG-KKENN--DGDSKTGMLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAE 113
           R  RV  LFGG  K+NN  DG SK G+ GNMQN+YETVKKAQMVVQVEAVRVQKELAAAE
Sbjct: 45  RSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQKELAAAE 104

Query: 114 FDGYCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERM 173
           FDGYC  EL+KVTLSGNQQPIRT ITEAAMELG EKLS LVTEAYKDAH KSV AMKERM
Sbjct: 105 FDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSVVAMKERM 164

Query: 174 SGLAQSLGMPPGLGEGLK 191
           S LAQSLGMPPGL EG+K
Sbjct: 165 SDLAQSLGMPPGLSEGMK 182


>AT2G24020.2 | Symbols:  | Uncharacterised BCR, YbaB family COG0718
           | chr2:10217869-10219269 REVERSE LENGTH=180
          Length = 180

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 118/138 (85%), Gaps = 3/138 (2%)

Query: 57  RCFRVYALFGG-KKENN--DGDSKTGMLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAE 113
           R  RV  LFGG  K+NN  DG SK G+ GNMQN+YETVKKAQMVVQVEAVRVQKELAAAE
Sbjct: 43  RSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQKELAAAE 102

Query: 114 FDGYCEDELIKVTLSGNQQPIRTIITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERM 173
           FDGYC  EL+KVTLSGNQQPIRT ITEAAMELG EKLS LVTEAYKDAH KSV AMKERM
Sbjct: 103 FDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSVVAMKERM 162

Query: 174 SGLAQSLGMPPGLGEGLK 191
           S LAQSLGMPPGL EG+K
Sbjct: 163 SDLAQSLGMPPGLSEGMK 180