Miyakogusa Predicted Gene
- Lj4g3v1968810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1968810.1 Non Chatacterized Hit- tr|C5Z6Q8|C5Z6Q8_SORBI
Putative uncharacterized protein Sb10g025360
OS=Sorghu,65.08,7e-19,SAM/Pointed domain,Sterile alpha motif/pointed
domain; no description,Sterile alpha motif/pointed do,CUFF.49982.1
(270 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G12462.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 129 2e-30
AT1G80520.1 | Symbols: | Sterile alpha motif (SAM) domain-conta... 106 2e-23
AT1G15760.1 | Symbols: | Sterile alpha motif (SAM) domain-conta... 102 2e-22
>AT2G12462.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Sterile alpha motif (SAM) domain-containing protein
(TAIR:AT1G15760.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:5050583-5051585 REVERSE LENGTH=249
Length = 249
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 144/281 (51%), Gaps = 43/281 (15%)
Query: 1 MDWFSWLSRTSLDPSLIYDYGLIFARNELQLEDASHFNHEFLQSMGVSIAKHRLEILKLV 60
MDWFSWLS+T LDP+L Y+YGLIFA+ +LQ ED + FNH FL+ +GV++ KHR+EILKL
Sbjct: 1 MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLS 60
Query: 61 KKEQVAAAA---RP---KKLSGVIK--RYLRKCMNKFVFQEQLEVKKKNLXXXXXXXXXX 112
K+E A ++ RP K +S VIK + + +NK++ V +
Sbjct: 61 KRETQALSSYNHRPVSAKLISVVIKATKSVGNRLNKWLSLGGTAVVEPLKEKQSPPPAYR 120
Query: 113 XXXXXEGNWYQEKWKGAIVKEERQVPKYKSRTIALSGPLDGR--MHEKM-INHNKSLKLS 169
GN + + A+V+ ER +P K + I SGPLD + EKM + N+S+ LS
Sbjct: 121 TGAFLTGNNNKVNAEKAVVQVER-LPVIKRKRIVKSGPLDRNHGIQEKMTLVSNRSMNLS 179
Query: 170 GPIDGRMNERMMMYTNRSPLVSKPLERRFTAPRSPRVSGPLDMMVENRTPRLARPSDATK 229
GP+D + ER+++ RSP+VS L+ R+SGPL RP +
Sbjct: 180 GPLDRSVQERLIL-AYRSPIVSGQLDGNLN--ERLRLSGPLK----------GRPPSPSV 226
Query: 230 AENENLMGYSPYNKPKXXXXXXXXXXXHTLWPTLFQDLKPT 270
Y YNK T W +F +LKPT
Sbjct: 227 --------YVEYNK----------RDDDTRWDAMFHNLKPT 249
>AT1G80520.1 | Symbols: | Sterile alpha motif (SAM)
domain-containing protein | chr1:30276481-30277059
FORWARD LENGTH=192
Length = 192
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 58/64 (90%)
Query: 1 MDWFSWLSRTSLDPSLIYDYGLIFARNELQLEDASHFNHEFLQSMGVSIAKHRLEILKLV 60
MDWFSWLSRT+L+ SLIY+YGL F+ NEL+ ED ++FNHEFLQSMG+SIAKHRLEILKL
Sbjct: 1 MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLA 60
Query: 61 KKEQ 64
++++
Sbjct: 61 RRDR 64
>AT1G15760.1 | Symbols: | Sterile alpha motif (SAM)
domain-containing protein | chr1:5425714-5426322
FORWARD LENGTH=202
Length = 202
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 71/91 (78%), Gaps = 3/91 (3%)
Query: 3 WFSWLSRTSLDPSLIYDYGLIFARNELQLEDASHFNHEFLQSMGVSIAKHRLEILKLVKK 62
WFSWLSRT+L+PSLI++YGL F++NEL+ ED S+F+HEFLQSMG+SIAKHRLEILKL ++
Sbjct: 5 WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64
Query: 63 EQVAA-AARPKKLSGVIK--RYLRKCMNKFV 90
++ + + +S V+ + RKC++ V
Sbjct: 65 DRKNSPPLTSRSISRVVTAIKKTRKCLSDHV 95