Miyakogusa Predicted Gene

Lj4g3v1968810.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1968810.1 Non Chatacterized Hit- tr|C5Z6Q8|C5Z6Q8_SORBI
Putative uncharacterized protein Sb10g025360
OS=Sorghu,65.08,7e-19,SAM/Pointed domain,Sterile alpha motif/pointed
domain; no description,Sterile alpha motif/pointed do,CUFF.49982.1
         (814 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO033449 similar to UniRef100_A7QS39 Cluster: Chromosom...   135   5e-31
gnl|LJGI|TC68928 similar to UniRef100_Q8H6R4 Cluster: Jp18; n=1;...   100   3e-20
gnl|LJGI|TC67452 similar to UniRef100_A7Q8X7 Cluster: Chromosome...    56   4e-07

>gnl|LJGI|GO033449 similar to UniRef100_A7QS39 Cluster: Chromosome undetermined
           scaffold_155, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_155,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (12%)
          Length = 105

 Score =  135 bits (68), Expect = 5e-31
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 70  ttcgcccggaacgagcttcaattggaagatgcaagccacttcaaccatgagtttcttcag 129
           |||||||| |||||||| || ||||||||||| | |||||||||||||||||||||||||
Sbjct: 104 ttcgcccgcaacgagctccagttggaagatgccatccacttcaaccatgagtttcttcag 45

                                                       
Query: 130 agcatgggagtctcaattgccaagcacaggctagaaattctcaa 173
           |||||||| || ||||||||||| ||||||||||||||| ||||
Sbjct: 44  agcatgggtgtttcaattgccaaacacaggctagaaattgtcaa 1


>gnl|LJGI|TC68928 similar to UniRef100_Q8H6R4 Cluster: Jp18; n=1; Poncirus
           trifoliata|Rep: Jp18 - Poncirus trifoliata (Hardy
           orange), partial (67%)
          Length = 1385

 Score = 99.6 bits (50), Expect = 3e-20
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                       
Query: 107 acttcaaccatgagtttcttcagagcatgggagtctcaattgccaagcacaggctagaaa 166
           |||||||||| ||||||||||||||||||||| |||| || ||||| |||||||||||||
Sbjct: 184 acttcaaccacgagtttcttcagagcatgggaatctccatagccaaacacaggctagaaa 243

                     
Query: 167 ttctcaagct 176
           ||||||||||
Sbjct: 244 ttctcaagct 253


>gnl|LJGI|TC67452 similar to UniRef100_A7Q8X7 Cluster: Chromosome chr9 scaffold_65,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr9 scaffold_65, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (59%)
          Length = 763

 Score = 56.0 bits (28), Expect = 4e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 151 aagcacaggctagaaattctcaagcttg 178
           ||||||||||||||||||||||||||||
Sbjct: 203 aagcacaggctagaaattctcaagcttg 230