Miyakogusa Predicted Gene

Lj4g3v1894280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1894280.1 Non Characterized Hit- tr|B9RP17|B9RP17_RICCO
Calcium lipid binding protein, putative OS=Ricinus
com,69.35,3e-19,SUBFAMILY NOT NAMED,NULL; EXTENDED
SYNAPTOTAGMIN-RELATED,NULL; no description,NULL; C2 domain
(Calci,NODE_47875_length_433_cov_134.995377.path2.1
         (62 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g115660.1 | calcium-dependent lipid-binding (CaLB domain) ...   125   6e-30
Medtr3g106660.1 | calcium-dependent lipid-binding (CaLB domain) ...    98   2e-21

>Medtr4g115660.1 | calcium-dependent lipid-binding (CaLB domain)
           family protein | HC | chr4:47788220-47795661 | 20130731
          Length = 566

 Score =  125 bits (315), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/62 (90%), Positives = 59/62 (95%)

Query: 1   MLIVEVWDHDTFGKDYMGRCILTLTRVILEGEYKERFELDGAKSGYLNLHLKWMPQPIYR 60
           ML+VEV+DHDTFGKDYMGR ILTLTR ILEGEYKERFELDGAKSG+LNLHLKWMPQ IYR
Sbjct: 505 MLLVEVYDHDTFGKDYMGRVILTLTRAILEGEYKERFELDGAKSGFLNLHLKWMPQSIYR 564

Query: 61  DS 62
           DS
Sbjct: 565 DS 566


>Medtr3g106660.1 | calcium-dependent lipid-binding (CaLB domain)
           family protein | HC | chr3:49295362-49289363 | 20130731
          Length = 565

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/61 (70%), Positives = 51/61 (83%)

Query: 1   MLIVEVWDHDTFGKDYMGRCILTLTRVILEGEYKERFELDGAKSGYLNLHLKWMPQPIYR 60
           MLIVE+WDHDTFGK+ MG+ I+TLT+VILEGEY E F LD AKSG +NLHL+W PQ  YR
Sbjct: 504 MLIVELWDHDTFGKEKMGKVIMTLTKVILEGEYDETFILDDAKSGKINLHLRWTPQHKYR 563

Query: 61  D 61
           +
Sbjct: 564 E 564