Miyakogusa Predicted Gene

Lj4g3v1894280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1894280.1 Non Chatacterized Hit- tr|B9RP17|B9RP17_RICCO
Calcium lipid binding protein, putative OS=Ricinus
com,69.35,3e-19,SUBFAMILY NOT NAMED,NULL; EXTENDED
SYNAPTOTAGMIN-RELATED,NULL; no description,NULL; C2 domain
(Calci,NODE_47875_length_433_cov_134.995377.path2.1
         (62 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05500.1 | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SY...   106   4e-24
AT5G11100.1 | Symbols: SYTD, ATSYTD, NTMC2TYPE2.2, NTMC2T2.2, SY...    93   4e-20

>AT1G05500.1 | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5
           | Calcium-dependent lipid-binding (CaLB domain) family
           protein | chr1:1625098-1628940 FORWARD LENGTH=560
          Length = 560

 Score =  106 bits (264), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 1   MLIVEVWDHDTFGKDYMGRCILTLTRVILEGEYKERFELDGAKSGYLNLHLKWMPQPIYR 60
           ML++EVWDHDTFGKDY+GRCILTLTRVI+E EYK+ + LD +K+G L LHLKWM Q IYR
Sbjct: 499 MLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYPLDESKTGKLQLHLKWMAQSIYR 558

Query: 61  DS 62
           DS
Sbjct: 559 DS 560


>AT5G11100.1 | Symbols: SYTD, ATSYTD, NTMC2TYPE2.2, NTMC2T2.2, SYT4
           | Calcium-dependent lipid-binding (CaLB domain) family
           protein | chr5:3532402-3535221 FORWARD LENGTH=569
          Length = 569

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 51/62 (82%)

Query: 1   MLIVEVWDHDTFGKDYMGRCILTLTRVILEGEYKERFELDGAKSGYLNLHLKWMPQPIYR 60
           +L +EVWDHD FGKD +GR I+TLTRV+LEGE++E FELDGAKSG L +HLKW P+   R
Sbjct: 507 LLTLEVWDHDKFGKDKIGRVIMTLTRVMLEGEFQEWFELDGAKSGKLCVHLKWTPRLKLR 566

Query: 61  DS 62
           D+
Sbjct: 567 DA 568