Miyakogusa Predicted Gene
- Lj4g3v1746250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1746250.1 Non Characterized Hit- tr|K4B147|K4B147_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40,1e-17,ZF_PHD_2,Zinc finger, PHD-finger; seg,NULL; PHD zinc
finger,Zinc finger, PHD-type; no description,Zi,CUFF.49669.1
(551 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g110090.1 | PHD-finger protein, putative | HC | chr4:45846... 520 e-147
Medtr7g112410.2 | poxvirus Ag35 surface protein | HC | chr7:4619... 96 8e-20
Medtr7g112410.1 | poxvirus Ag35 surface protein | HC | chr7:4619... 96 9e-20
Medtr0001s0570.5 | RING/FYVE/PHD zinc finger protein, putative |... 52 1e-06
Medtr0001s0570.3 | RING/FYVE/PHD zinc finger protein, putative |... 52 1e-06
Medtr0001s0570.2 | RING/FYVE/PHD zinc finger protein, putative |... 52 1e-06
Medtr0001s0570.4 | RING/FYVE/PHD zinc finger protein, putative |... 52 1e-06
Medtr0001s0570.6 | RING/FYVE/PHD zinc finger protein, putative |... 52 2e-06
Medtr0001s0570.1 | RING/FYVE/PHD zinc finger protein, putative |... 52 2e-06
Medtr6g007650.1 | methyl-CpG-binding domain protein | HC | chr6:... 50 8e-06
>Medtr4g110090.1 | PHD-finger protein, putative | HC |
chr4:45846699-45843403 | 20130731
Length = 614
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 300/562 (53%), Positives = 367/562 (65%), Gaps = 24/562 (4%)
Query: 1 MEWAKHESRCPLCRQRFSNIRRPPMLGLFPSSRDVNVPCRDQATHSYGNITTGPVGSNGE 60
MEWAKHESRCPLCRQRFSN+RR PM +F SSRDV +P RDQ H +GN+T+GPV SN E
Sbjct: 62 MEWAKHESRCPLCRQRFSNVRRLPMHDVFSSSRDVKIPIRDQVYHPHGNMTSGPVDSNAE 121
Query: 61 AKCSVCLIESHENLLLVCDLCSTVSHSFCTGLGFTVPEGDWFCPDCATARESVNSTNEES 120
KC +C ENL+L+CDLC TVSH+FC GLG+TVPEGDWFC DCA + E+ + +
Sbjct: 122 RKCCICDGAKDENLILICDLCDTVSHTFCVGLGYTVPEGDWFCHDCAVSLET--NASYML 179
Query: 121 EQQNVS-----SVTISDIVRGPGRSNQVDGRSVTXXXXXXXXXAPVISLPDRVSGFNANI 175
+QQNV VTI +I+RG G +QV R + + I L DRVS
Sbjct: 180 DQQNVELKAAPDVTILNILRGTG--SQVVRRPMASPARQNNSLSSDIPLLDRVSRSEGKK 237
Query: 176 PVSRVELAKHRVQAIRANWNALRTGSLRF-SNSAQSGGTASEKQESGSLSGGKLNVSPSM 234
PVS V+ A VQ +R NWN+LR+G LRF S + QSGGT+S+ + S SLS GKL+ S SM
Sbjct: 238 PVSEVQRALRNVQLLRENWNSLRSGKLRFHSKTFQSGGTSSQTENSSSLSCGKLDDSHSM 297
Query: 235 ASGSGGLQQSAVQGGSSSNGLNDRGM-NDVEKAWKMMDRAKMKKQTHQRTSSIPQRAGN- 292
AS S QQS VQG SSN L++ G+ +DV+KAWKMM +AK +QT +RTS I Q +
Sbjct: 298 ASASR--QQSMVQGAQSSNMLSNGGLKDDVDKAWKMMRKAKTMQQTPKRTSRIQQEVDDG 355
Query: 293 PSRSGAREMSLSHFDCPASENQQLRKLDSRHTRMDKKREYSSLNKNLGNHKYPMSGEKRQ 352
PS SGARE S S CP S+ +Q R LD + +M +K ++S L K L NH+ PM GEKRQ
Sbjct: 356 PSCSGAREKSFSPRSCPESK-KQPRTLDFMYAKMQEKCDHSCLKKKLENHRSPMLGEKRQ 414
Query: 353 SRV---ETMQHVKDR-TNSEGYGGRPLPKMVCAGMQGVPCHDYEERNGANEPRRFGCLVT 408
SRV E +QH+++ T EGY PLP V PCH+ ERN A E R+ LVT
Sbjct: 415 SRVLCEEKIQHLRNHNTRLEGYRELPLPSKVHTSTHRAPCHN--ERNAAKEQRQSAYLVT 472
Query: 409 SEGSAPSHCKPGSVI-SNKDADIFHEEKRLTKTFGEGNTRNFEEAKDEIKSLVKTNLKFL 467
S G APS K GSV SNKD DIF++EK L K+FG G T+N E+AK EI+SLVK NL L
Sbjct: 473 SVGLAPSSRKSGSVFASNKDVDIFNKEKSLAKSFGNGITKNTEDAKTEIQSLVKLNLNCL 532
Query: 468 TKDKKLGVETFKIVARQATHSILAACXXXXXXXXXXXXXXXXXHHDHNQQLKKSTLMPNC 527
+K+LGVETFK+VARQATH+ILAAC H DH Q +KS LMPNC
Sbjct: 533 AINKQLGVETFKVVARQATHTILAACHSEQQKSNIYSSNSVCSHTDH-IQFQKSNLMPNC 591
Query: 528 CSQCFDVFVNNTVNSILLDKVG 549
C QCF VFVN+ V S +L+KVG
Sbjct: 592 CRQCFHVFVNDVVKS-MLEKVG 612
>Medtr7g112410.2 | poxvirus Ag35 surface protein | HC |
chr7:46190529-46186663 | 20130731
Length = 865
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 1 MEWAKHESRCPLCRQRFSNIRRPPMLGLFPSSRDVNVPCRDQATHSYGNITTGPVGSNGE 60
MEW+K ESRCPLC+QRF I +P + + VP RDQ +
Sbjct: 455 MEWSKVESRCPLCKQRFQTISKPARSTTAEEAV-IQVPERDQVYQPTEEELRSYIDPYES 513
Query: 61 AKCSVCLIESHENLLLVCDLCSTVSHSFCTGLGFTVPEGDWFCPDC-ATARESVNSTNEE 119
CS C + + L+L+CD+C + +H++C GLG VPEG+W+C C A S+NS +E
Sbjct: 514 VMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQE 573
Query: 120 SE 121
S+
Sbjct: 574 SD 575
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 448 NFEEAKDEIKSLVKTNLKFLTKDKKLGVETFKIVARQATHSILAAC 493
N K+ ++S+VK++LK L++D LG TFK +AR +TH+ILAAC
Sbjct: 794 NLHIVKERLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAAC 839
>Medtr7g112410.1 | poxvirus Ag35 surface protein | HC |
chr7:46190529-46186663 | 20130731
Length = 904
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 1 MEWAKHESRCPLCRQRFSNIRRPPMLGLFPSSRDVNVPCRDQATHSYGNITTGPVGSNGE 60
MEW+K ESRCPLC+QRF I +P + VP RDQ +
Sbjct: 455 MEWSKVESRCPLCKQRFQTISKPAR-STTAEEAVIQVPERDQVYQPTEEELRSYIDPYES 513
Query: 61 AKCSVCLIESHENLLLVCDLCSTVSHSFCTGLGFTVPEGDWFCPDC-ATARESVNSTNEE 119
CS C + + L+L+CD+C + +H++C GLG VPEG+W+C C A S+NS +E
Sbjct: 514 VMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQE 573
Query: 120 SE 121
S+
Sbjct: 574 SD 575
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 448 NFEEAKDEIKSLVKTNLKFLTKDKKLGVETFKIVARQATHSILAACXXXXXXXXX-XXXX 506
N K+ ++S+VK++LK L++D LG TFK +AR +TH+ILAAC
Sbjct: 794 NLHIVKERLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAACGLEHNTSEVCTVPP 853
Query: 507 XXXXHHDHNQQLKKSTLMPNCCSQCFDVFVNNTVNSIL 544
H + +++ CCS CFD FV + V SIL
Sbjct: 854 PSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDVVKSIL 891
>Medtr0001s0570.5 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:431394-437206 | 20130731
Length = 1231
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 63 CSVCLIESHENLLLVCDLCST-VSHSFCT-GLGFTVPEGDWFCPDCATARESVNSTNEES 120
C +C ENLL +C CS H++C + VPEGDWFC +C A E+ N E
Sbjct: 103 CDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGDWFCEECQYAEETANQRLEGK 162
Query: 121 EQQNVSSVT 129
VSS +
Sbjct: 163 SGHKVSSTS 171
>Medtr0001s0570.3 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:431394-437206 | 20130731
Length = 1231
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 63 CSVCLIESHENLLLVCDLCST-VSHSFCT-GLGFTVPEGDWFCPDCATARESVNSTNEES 120
C +C ENLL +C CS H++C + VPEGDWFC +C A E+ N E
Sbjct: 103 CDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGDWFCEECQYAEETANQRLEGK 162
Query: 121 EQQNVSSVT 129
VSS +
Sbjct: 163 SGHKVSSTS 171
>Medtr0001s0570.2 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:430905-437206 | 20130731
Length = 1394
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 63 CSVCLIESHENLLLVCDLCST-VSHSFCT-GLGFTVPEGDWFCPDCATARESVNSTNEES 120
C +C ENLL +C CS H++C + VPEGDWFC +C A E+ N E
Sbjct: 266 CDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGDWFCEECQYAEETANQRLEGK 325
Query: 121 EQQNVSSVT 129
VSS +
Sbjct: 326 SGHKVSSTS 334
>Medtr0001s0570.4 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:430905-437206 | 20130731
Length = 1394
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 63 CSVCLIESHENLLLVCDLCST-VSHSFCT-GLGFTVPEGDWFCPDCATARESVNSTNEES 120
C +C ENLL +C CS H++C + VPEGDWFC +C A E+ N E
Sbjct: 266 CDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGDWFCEECQYAEETANQRLEGK 325
Query: 121 EQQNVSSVT 129
VSS +
Sbjct: 326 SGHKVSSTS 334
>Medtr0001s0570.6 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:430833-437206 | 20130731
Length = 1418
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 63 CSVCLIESHENLLLVCDLCST-VSHSFCT-GLGFTVPEGDWFCPDCATARESVNSTNEES 120
C +C ENLL +C CS H++C + VPEGDWFC +C A E+ N E
Sbjct: 290 CDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGDWFCEECQYAEETANQRLEGK 349
Query: 121 EQQNVSSVT 129
VSS +
Sbjct: 350 SGHKVSSTS 358
>Medtr0001s0570.1 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:430833-437206 | 20130731
Length = 1418
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 63 CSVCLIESHENLLLVCDLCST-VSHSFCT-GLGFTVPEGDWFCPDCATARESVNSTNEES 120
C +C ENLL +C CS H++C + VPEGDWFC +C A E+ N E
Sbjct: 290 CDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGDWFCEECQYAEETANQRLEGK 349
Query: 121 EQQNVSSVT 129
VSS +
Sbjct: 350 SGHKVSSTS 358
>Medtr6g007650.1 | methyl-CpG-binding domain protein | HC |
chr6:1748720-1735614 | 20130731
Length = 2161
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 60 EAKCSVCLIESHENLLLVCDLCSTVSHSFCTGLGFT-VPEGDWFCPDCATARESVNSTNE 118
E C +C I+ ++ +L+CD C H +C +PEG+W+CP C + + E
Sbjct: 1243 EGVCKICGIDRDDDSVLLCDTCDAEYHKYCLNPPLARIPEGNWYCPSCIGGKHATQDLTE 1302
Query: 119 ESE 121
++
Sbjct: 1303 RAQ 1305