Miyakogusa Predicted Gene

Lj4g3v1746250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1746250.1 Non Chatacterized Hit- tr|K4B147|K4B147_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40,1e-17,ZF_PHD_2,Zinc finger, PHD-finger; seg,NULL; PHD zinc
finger,Zinc finger, PHD-type; no description,Zi,CUFF.49669.1
         (551 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657...    89   9e-18
AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain ...    50   3e-06

>AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657022
           FORWARD LENGTH=883
          Length = 883

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 2/108 (1%)

Query: 1   MEWAKHESRCPLCRQRFSNIRRPPMLGLFPSSRDVNVPC--RDQATHSYGNITTGPVGSN 58
           MEW+K ESRCPLC+QRF  I +P         R+V +P   RDQ            +   
Sbjct: 442 MEWSKVESRCPLCKQRFRTISKPARSTPGVDLREVVIPVPERDQVYQPTEEELRSYLDPY 501

Query: 59  GEAKCSVCLIESHENLLLVCDLCSTVSHSFCTGLGFTVPEGDWFCPDC 106
               C+ C     + L+L+CDLC + +H++C GLG  VPEG+W+C  C
Sbjct: 502 ENIICTECHQGDDDGLMLLCDLCDSSAHTYCVGLGREVPEGNWYCEGC 549


>AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 |
            chr3:173316-182038 FORWARD LENGTH=2176
          Length = 2176

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 54   PVGSNGEAKCSVCLIESHENLLLVCDLCSTVSHSFCTGLGFT-VPEGDWFCPDCATAR 110
            P     E  C VC ++  ++ +L+CD C    H++C       +P+G+W+CP C  A+
Sbjct: 1281 PKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCVIAK 1338