Miyakogusa Predicted Gene

Lj4g3v1539370.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1539370.2 Non Chatacterized Hit- tr|I1GZF5|I1GZF5_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,39.47,0.000000000002,Glucocorticoid receptor-like (DNA-binding
domain),NULL; LIM,Zinc finger, LIM-type; SUBFAMILY NOT
NAM,CUFF.49380.2
         (576 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC65692 similar to UniRef100_Q59HI2 Cluster: Transcript...    58   6e-08
gnl|LJGI|TC58048 similar to UniRef100_Q59HI2 Cluster: Transcript...    58   6e-08

>gnl|LJGI|TC65692 similar to UniRef100_Q59HI2 Cluster: Transcription factor lim1;
           n=2; Eucalyptus|Rep: Transcription factor lim1 -
           Eucalyptus camaldulensis (River red gum), partial (89%)
          Length = 702

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 88  gtgtaccataaatcttgcttcagatgtcaccactgcaagggcaccctcaagct 140
           |||| ||| ||| ||||||||||||| ||||||||||| || |||||||||||
Sbjct: 282 gtgttccacaaagcttgcttcagatgccaccactgcaaaggaaccctcaagct 334


>gnl|LJGI|TC58048 similar to UniRef100_Q59HI2 Cluster: Transcription factor lim1;
           n=2; Eucalyptus|Rep: Transcription factor lim1 -
           Eucalyptus camaldulensis (River red gum), partial (96%)
          Length = 1024

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 88  gtgtaccataaatcttgcttcagatgtcaccactgcaagggcaccctcaagct 140
           |||| ||| ||| ||||||||||||| ||||||||||| || |||||||||||
Sbjct: 242 gtgttccacaaagcttgcttcagatgccaccactgcaaaggaaccctcaagct 294