Miyakogusa Predicted Gene

Lj4g3v1426400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1426400.1 Non Characterized Hit- tr|D7MGN7|D7MGN7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,43.85,0.000000000000002,seg,NULL,CUFF.49229.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g104870.1 | hypothetical protein | HC | chr4:43445749-4344...   159   9e-40

>Medtr4g104870.1 | hypothetical protein | HC |
           chr4:43445749-43446405 | 20130731
          Length = 144

 Score =  159 bits (402), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 106/151 (70%), Gaps = 11/151 (7%)

Query: 1   MKKRPELEQQHHDQDLEVMKAVAQAWYSHSGSSRPMSEFDAPRGNFKGKPSRFKLEALNK 60
           MKK+   E  +H+QDLEV+KAVAQAWY+HSGS +P+SEFDA R NF+GKPSRFKLE L K
Sbjct: 1   MKKKQHHE--NHNQDLEVLKAVAQAWYNHSGSVKPLSEFDARRRNFRGKPSRFKLETLTK 58

Query: 61  PXXXXXXXXXXXXXXXXCWDFKQSLWDPYELVTVSRRIETGLALDSPFDEFLCCSPRIQQ 120
                            C DF+ SLWDPYELVTVSRRIETGLALD+PFD+F  C  +  Q
Sbjct: 59  ----SSSSRETNSSTYYC-DFQHSLWDPYELVTVSRRIETGLALDNPFDDF--CVSKSVQ 111

Query: 121 PRGKLESKNSLRSLFKH--SKRFIASKISKE 149
            +GK ESKNSLR+LF +  S+RF   K S E
Sbjct: 112 LKGKRESKNSLRNLFNNMSSRRFNLPKFSTE 142