Miyakogusa Predicted Gene

Lj4g3v1426400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1426400.1 Non Chatacterized Hit- tr|D7MGN7|D7MGN7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,43.85,0.000000000000002,seg,NULL,CUFF.49229.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24700.1 | Symbols:  | unknown protein; Has 20 Blast hits to ...    75   1e-14

>AT4G24700.1 | Symbols:  | unknown protein; Has 20 Blast hits to 20
           proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:12744807-12745238 REVERSE LENGTH=143
          Length = 143

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 22/133 (16%)

Query: 18  VMKAVAQAWYSHSGSSR-PMSEFDAPRGN--FKGKPSRFKLEALNKPXXXXXXXXXXXXX 74
           +MKA AQAW SHS +S+  + EFDA R +   KGK SRFK EAL+               
Sbjct: 24  LMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEALSAKHHPSFLD------ 77

Query: 75  XXXCWDFKQSLWDPYELVTVSRRIETGLALD----SPFDEFLCCSPRIQQPRGKLESKNS 130
               W+F QSLWDPYE+++VS+++E  L L+    S  D       + ++ R   +S+NS
Sbjct: 78  ----WEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMKKKKTR---DSRNS 130

Query: 131 LRSLFKH--SKRF 141
           LRSLF    SKRF
Sbjct: 131 LRSLFTRSSSKRF 143