Miyakogusa Predicted Gene

Lj4g3v1411020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1411020.1 Non Characterized Hit- tr|F4IBV2|F4IBV2_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At1,48.48,0.000000000000007,CENP-X,CENP-S complex, centromere
protein X; seg,NULL,CUFF.49210.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g104430.1 | centromere protein X | HC | chr4:43210707-4321...   132   8e-32
Medtr4g104430.2 | centromere protein X | HC | chr4:43210663-4321...   109   7e-25

>Medtr4g104430.1 | centromere protein X | HC |
           chr4:43210707-43212513 | 20130731
          Length = 103

 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 73/103 (70%)

Query: 1   MEEPTFELDLIRSILKRVWELRALERENVGPSEALDSEVGAGTSKKNRPTSANANALKLT 60
           MEEPTFE DLI SI+KR+W LR LERENV  ++ALDSEV AG+SKKNR TSANA+ALKLT
Sbjct: 1   MEEPTFESDLIHSIMKRIWTLRTLERENVATNDALDSEVAAGSSKKNRTTSANASALKLT 60

Query: 61  CELLRVFITXXXXXXXXXXXXXXXXXXXXXHLECILPQLLLDF 103
           CELLRVF+T                     HLE ILPQLLLDF
Sbjct: 61  CELLRVFVTEAVQRAIAIAETEGDSQIEATHLESILPQLLLDF 103


>Medtr4g104430.2 | centromere protein X | HC |
           chr4:43210663-43212503 | 20130731
          Length = 89

 Score =  109 bits (272), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 61/89 (68%)

Query: 15  LKRVWELRALERENVGPSEALDSEVGAGTSKKNRPTSANANALKLTCELLRVFITXXXXX 74
           +KR+W LR LERENV  ++ALDSEV AG+SKKNR TSANA+ALKLTCELLRVF+T     
Sbjct: 1   MKRIWTLRTLERENVATNDALDSEVAAGSSKKNRTTSANASALKLTCELLRVFVTEAVQR 60

Query: 75  XXXXXXXXXXXXXXXXHLECILPQLLLDF 103
                           HLE ILPQLLLDF
Sbjct: 61  AIAIAETEGDSQIEATHLESILPQLLLDF 89