Miyakogusa Predicted Gene

Lj4g3v1411020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1411020.1 Non Chatacterized Hit- tr|F4IBV2|F4IBV2_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At1,48.48,0.000000000000007,CENP-X,CENP-S complex, centromere
protein X; seg,NULL,CUFF.49210.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78790.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...    90   2e-19
AT1G78790.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    54   2e-08

>AT1G78790.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2008
           (InterPro:IPR018552); Has 69 Blast hits to 69 proteins
           in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33;
           Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes -
           3 (source: NCBI BLink). | chr1:29623930-29624785 REVERSE
           LENGTH=104
          Length = 104

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 58/99 (58%)

Query: 5   TFELDLIRSILKRVWELRALERENVGPSEALDSEVGAGTSKKNRPTSANANALKLTCELL 64
           TF+ DLI +I K +W  R  ERE     +A ++EV  GT+KKNR  SANANALKL+CELL
Sbjct: 6   TFDSDLIHAIFKHIWARRFRERERSDAIDATEAEVALGTTKKNRLASANANALKLSCELL 65

Query: 65  RVFITXXXXXXXXXXXXXXXXXXXXXHLECILPQLLLDF 103
           + F++                     HLE ILPQLLLDF
Sbjct: 66  KSFVSEAVQRAAIIAEAEGMEKIEATHLERILPQLLLDF 104


>AT1G78790.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF2008
           (InterPro:IPR018552); Has 27 Blast hits to 27 proteins
           in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:29623930-29624785 REVERSE
           LENGTH=86
          Length = 86

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 18/99 (18%)

Query: 5   TFELDLIRSILKRVWELRALERENVGPSEALDSEVGAGTSKKNRPTSANANALKLTCELL 64
           TF+ DLI +I K +W  R  ERE     +A ++EV  GT+KKNR  S       +  E  
Sbjct: 6   TFDSDLIHAIFKHIWARRFRERERSDAIDATEAEVALGTTKKNRLASEAVQRAAIIAE-- 63

Query: 65  RVFITXXXXXXXXXXXXXXXXXXXXXHLECILPQLLLDF 103
                                     HLE ILPQLLLDF
Sbjct: 64  ----------------AEGMEKIEATHLERILPQLLLDF 86