Miyakogusa Predicted Gene

Lj4g3v1202180.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1202180.2 Non Chatacterized Hit- tr|E1ZQA3|E1ZQA3_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,32.29,9e-19,seg,NULL; coiled-coil,NULL; DUF2052,Protein of
unknown function DUF2052, coiled-coil,CUFF.48631.2
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47090.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   287   7e-78

>AT5G47090.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2052,
           coiled-coil (InterPro:IPR018613); Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:19127274-19128493 FORWARD LENGTH=310
          Length = 310

 Score =  287 bits (734), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 162/338 (47%), Positives = 190/338 (56%), Gaps = 40/338 (11%)

Query: 1   MEEVKKKMNDEAV-------ERITERLSSLDNLYFPRAVQSTTTLPSQRKTXXXXXXXXX 53
           MEE KK M  EA        E ITERLSSLDNLYFPRAVQ T     QRK+         
Sbjct: 1   MEEKKKTMEMEATTMKGTAAEDITERLSSLDNLYFPRAVQLTAASSDQRKSILLDLLRRD 60

Query: 54  XXXXXERYGSELTCTELGDFDSMTDDYEVNWHVTRLRSAMSPTAEELXXXXXXXXXXXXA 113
                ERYGSEL   EL +FD+M  DYEV+WH+  LR  +SPT+EE+            A
Sbjct: 61  PAVFLERYGSELLVDELLEFDAMKHDYEVDWHLKNLRKKISPTSEEIKSRSVAVRNRRLA 120

Query: 114 YLDRLVMGGRYFSEEAMREREPYLHHEYVGRFQDQSGRGMARPGERWSETLLRRCEEAEL 173
           YL++LV  G+YFSE+AMR+REPYLHHEYVG+FQD  GR MARPGERWSETL+RR EEA L
Sbjct: 121 YLNKLVSEGQYFSEDAMRDREPYLHHEYVGKFQDVMGRNMARPGERWSETLMRRAEEAVL 180

Query: 174 VAKIRGEQQRMGVAERDWVGNEGFQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXG----- 228
           V +IR EQQR+GV+E DWVGNE  ++                                  
Sbjct: 181 VTRIREEQQRLGVSESDWVGNEKMEESEEEEEEESEEEEEEEDEEAKNPTEASSSSLNGK 240

Query: 229 ERTSGGVTALPVERDMNQPDVTDNAPXXXXXXXXXXXXXXXXXXDRMNQFAYIMQQKFLL 288
           E+     T LP E                               D M+QF  IM+QKFL 
Sbjct: 241 EQKEKATTVLPPE----------------------------EMQDMMDQFTSIMEQKFLS 272

Query: 289 GEDHEYLDYAKIDNDETLDDHWQREANIDAEERYFADD 326
           GEDH++LDYAKIDNDETLDDHW RE   DAE++YF +D
Sbjct: 273 GEDHQHLDYAKIDNDETLDDHWLREIGRDAEDKYFDED 310