Miyakogusa Predicted Gene

Lj4g3v0998910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0998910.1 Non Characterized Hit- tr|K3XRI8|K3XRI8_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,47.54,0.000000005,seg,NULL,CUFF.48257.1
         (364 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g076840.1 | transmembrane protein, putative | HC | chr8:32...   597   e-171

>Medtr8g076840.1 | transmembrane protein, putative | HC |
           chr8:32597242-32589333 | 20130731
          Length = 405

 Score =  597 bits (1539), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 284/345 (82%), Positives = 309/345 (89%), Gaps = 1/345 (0%)

Query: 20  WIASISMPTSNCYAFDNSSRIVDFSSWIGYLWEYDDVKEGSDLVIRFCKDVERRSQTGYV 79
           W+ SISMP+SNCYAF+NSSRIVDFS W GY +EYD+ K+GSDLVIRFCKDVE RSQTGYV
Sbjct: 20  WVTSISMPSSNCYAFNNSSRIVDFSGWSGYPFEYDE-KQGSDLVIRFCKDVESRSQTGYV 78

Query: 80  DFGRFDRFNYFVAGSGQSDFVQEFYNGDLMGCEQTFDKMGRTAQVNIICGSCLNGQCKGR 139
           DFGRFD+FNYFVAGSG+SDFVQEFYNGDLMGCEQ++DKMGRTAQVNIICGSC NGQCKG 
Sbjct: 79  DFGRFDKFNYFVAGSGKSDFVQEFYNGDLMGCEQSYDKMGRTAQVNIICGSCPNGQCKGH 138

Query: 140 PGCICNVTYESKCRVLVELAIPCEKPGPLVFQGFTVGFHPRSWELVNNGMTQFGFEKTHH 199
           PGCIC+V YES CRVL+ELAI C++PGP +F G TVGFHPRSWELV NGMTQFGF+K H 
Sbjct: 139 PGCICHVAYESNCRVLIELAISCDEPGPKIFTGSTVGFHPRSWELVYNGMTQFGFDKPHR 198

Query: 200 EFSFQTGQTHAVLFMTAVASLSSLVQKPILEVIPPKGLEVRLSGSAASGKPPTTLSPTML 259
           +FSFQT QT  VLF +AVASLSSLVQKPIL+V P KGL V+LSGSAASG PPTTLSP ML
Sbjct: 199 DFSFQTAQTQVVLFTSAVASLSSLVQKPILKVHPNKGLGVKLSGSAASGMPPTTLSPAML 258

Query: 260 IIDWRCEVARDTPYEVNITIPVEGYEPIQFVLTKMCDYKQNPGGGTTRGWAIFGVLSCIF 319
           I+DWRCEVARD PY VNITIPVEGYEPIQFVLTK+CDYKQ  GGG TRGWAIFGV+SCIF
Sbjct: 259 IVDWRCEVARDAPYVVNITIPVEGYEPIQFVLTKICDYKQGQGGGATRGWAIFGVVSCIF 318

Query: 320 LVSSTIFCCGGFIYKTKVERQRGIDALPGMTILSACLETIGGAAQ 364
            VSST+FCCGGFIYKTKVERQRGIDALPGMT LSACLET+ G  Q
Sbjct: 319 FVSSTLFCCGGFIYKTKVERQRGIDALPGMTYLSACLETVSGPGQ 363