Miyakogusa Predicted Gene

Lj4g3v0998910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0998910.1 Non Chatacterized Hit- tr|K3XRI8|K3XRI8_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,47.54,0.000000005,seg,NULL,CUFF.48257.1
         (364 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36440.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   470   e-133

>AT4G36440.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 15 growth stages; Has 41 Blast hits to 41
           proteins in 14 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:17207213-17209873 REVERSE LENGTH=394
          Length = 394

 Score =  470 bits (1209), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/343 (64%), Positives = 274/343 (79%), Gaps = 14/343 (4%)

Query: 22  ASISMPTSNCYAFDNSSRIVDFSSWIGYLWEYDDVKEGSDLVIRFCKDVERRSQTGYVDF 81
           AS+ +P SNCYA DNSSR+VDFSSWIG+ +EYD  KE  DLV+RFCKDVE R Q GYVDF
Sbjct: 24  ASVPVPDSNCYALDNSSRLVDFSSWIGHPFEYDG-KE-FDLVVRFCKDVETRGQAGYVDF 81

Query: 82  GRFDRFNYFVAGSGQSDFVQEFYNGDLMGCEQTFDKMGRTAQVNIICGSCLNGQCKGRPG 141
           GRFD  +YFV+ S   DFVQ            ++DK+GRTAQVNIICG+C +G+CKG  G
Sbjct: 82  GRFDPLSYFVSSSENFDFVQ------------SYDKLGRTAQVNIICGNCSDGRCKGGLG 129

Query: 142 CICNVTYESKCRVLVELAIPCEKPGPLVFQGFTVGFHPRSWELVNNGMTQFGFEKTHHEF 201
           CIC+VT +S CRV V+LAIPCEKPGP VF+GFTVG HPRSWE++ NGMTQFGF+K   EF
Sbjct: 130 CICSVTQDSTCRVTVDLAIPCEKPGPRVFKGFTVGLHPRSWEIIYNGMTQFGFDKPRREF 189

Query: 202 SFQTGQTHAVLFMTAVASLSSLVQKPILEVIPPKGLEVRLSGSAASGKPPTTLSPTMLII 261
           SF+T QTH  L+MTA+ASLS+LV KPI++V P  GL+V+++GS+ +G  PTTLSP+ L++
Sbjct: 190 SFKTEQTHLTLYMTAIASLSTLVGKPIIKVSPENGLDVKIAGSSLTGNHPTTLSPSTLVL 249

Query: 262 DWRCEVARDTPYEVNITIPVEGYEPIQFVLTKMCDYKQNPGGGTTRGWAIFGVLSCIFLV 321
           DW CE +R TPYEVN+TIPV+GY+P+QF LTK+C+Y Q   GG+ +GWAIFGV SC+FLV
Sbjct: 250 DWNCEKSRRTPYEVNVTIPVDGYDPVQFFLTKLCEYNQGNEGGSAKGWAIFGVFSCVFLV 309

Query: 322 SSTIFCCGGFIYKTKVERQRGIDALPGMTILSACLETIGGAAQ 364
           +S +FCCGGFIYKT+VER RG DALPGM++LS  LET+ G+ Q
Sbjct: 310 ASALFCCGGFIYKTRVERVRGTDALPGMSLLSGLLETVSGSGQ 352