Miyakogusa Predicted Gene

Lj4g3v0987840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0987840.1 Non Chatacterized Hit- tr|Q5JXM0|Q5JXM0_HUMAN
Putative uncharacterized protein DKFZp564C0482
OS=Homo,32.98,1e-18,EXOSOME COMPLEX EXONUCLEASE RRP43 (RIBOSOMAL RNA
PROCESSING PROTEIN 43),NULL; EXOSOME COMPLEX EXONUC,gene.g53648.t1.1
         (317 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g27080.1                                                       325   3e-89
Glyma18g50270.1                                                       318   4e-87
Glyma14g22250.2                                                       310   1e-84
Glyma14g22250.1                                                       303   1e-82
Glyma11g01740.1                                                        60   4e-09
Glyma01g43760.1                                                        59   7e-09
Glyma02g07710.1                                                        49   6e-06

>Glyma08g27080.1 
          Length = 302

 Score =  325 bits (834), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/210 (78%), Positives = 175/210 (83%), Gaps = 8/210 (3%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSKH-------SGMIDLKELSLVSGKAAWMAYLDV 167
           +IDFHMPPICSPIVRPGRPAEASPVVSK        S MIDLKELSLVSGKAAWMAYLD+
Sbjct: 94  AIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSKMIDLKELSLVSGKAAWMAYLDI 153

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVNKEKRKL 227
           YC                   SHLQIP VA+NDDGKIVLVS+EDGQK+ QE VNKEKRKL
Sbjct: 154 YCLDADGALFDAALLSAVASLSHLQIPVVAMNDDGKIVLVSEEDGQKREQEPVNKEKRKL 213

Query: 228 TLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAYTSA 287
           TLR+IPFSLTCIL+KNYILADPTAEEESIMETH+T+VL+TSGQLISLYKPGGPVLAYTSA
Sbjct: 214 TLRSIPFSLTCILHKNYILADPTAEEESIMETHVTVVLDTSGQLISLYKPGGPVLAYTSA 273

Query: 288 LQDCVPLTRQRVKELKSFLDKENSAAMEVE 317
           +QDC  LTRQRVKELKSFLDK NS AMEVE
Sbjct: 274 IQDCAALTRQRVKELKSFLDKANS-AMEVE 302



 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 76/85 (89%), Gaps = 7/85 (8%)

Query: 16  TMLTAIKMEVMTPSLESPDEGCIAIDFHMPPICSPIVRPGRPAEASPVVSKH-------S 68
           T+LTAIKMEVMTPSLESPDEGC+AIDFHMPPICSPIVRPGRPAEASPVVSK        S
Sbjct: 71  TILTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSS 130

Query: 69  GMIDLKELSLVSGKAAWMAYLDVYC 93
            MIDLKELSLVSGKAAWMAYLD+YC
Sbjct: 131 KMIDLKELSLVSGKAAWMAYLDIYC 155


>Glyma18g50270.1 
          Length = 311

 Score =  318 bits (815), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/209 (77%), Positives = 173/209 (82%), Gaps = 8/209 (3%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSKH-------SGMIDLKELSLVSGKAAWMAYLDV 167
           SIDFHMPPICSPIVRPGRPAEASP+VSK        S M DLKELSLVSGKAAWMAYLD+
Sbjct: 104 SIDFHMPPICSPIVRPGRPAEASPMVSKQLSNTISSSRMTDLKELSLVSGKAAWMAYLDI 163

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVNKEKRKL 227
           YC                   SHLQIP +A+NDDGKIVLVSDEDGQK+AQE VNKEKRKL
Sbjct: 164 YCLDADGALFDAALLSAIAALSHLQIPSIAMNDDGKIVLVSDEDGQKRAQEPVNKEKRKL 223

Query: 228 TLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAYTSA 287
           TLR+IPFSLTCIL+KNYILADPTAEEESIMETH+T+VL+TSGQLISLYKPGGPVLAYTSA
Sbjct: 224 TLRSIPFSLTCILHKNYILADPTAEEESIMETHVTVVLDTSGQLISLYKPGGPVLAYTSA 283

Query: 288 LQDCVPLTRQRVKELKSFLDKENSAAMEV 316
           +QDC  LTRQRVKEL +FLDK NS AMEV
Sbjct: 284 IQDCAALTRQRVKELNNFLDKANS-AMEV 311



 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 75/95 (78%), Gaps = 17/95 (17%)

Query: 16  TMLTAIKMEVMTPSLESPDEGCI----------AIDFHMPPICSPIVRPGRPAEASPVVS 65
           TMLTAIKME+MTPSLESPDEGC+          +IDFHMPPICSPIVRPGRPAEASP+VS
Sbjct: 71  TMLTAIKMEIMTPSLESPDEGCLDWLLLVGPLMSIDFHMPPICSPIVRPGRPAEASPMVS 130

Query: 66  KH-------SGMIDLKELSLVSGKAAWMAYLDVYC 93
           K        S M DLKELSLVSGKAAWMAYLD+YC
Sbjct: 131 KQLSNTISSSRMTDLKELSLVSGKAAWMAYLDIYC 165


>Glyma14g22250.2 
          Length = 299

 Score =  310 bits (795), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/209 (76%), Positives = 169/209 (80%), Gaps = 12/209 (5%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSKH-------SGMIDLKELSLVSGKAAWMAYLDV 167
           +IDFHMPPICSPIVRPGRPAEASPVVSK        S MIDLKELSLV GKAAWMAYLD+
Sbjct: 94  AIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKAAWMAYLDI 153

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVNKEKRKL 227
           YC                   SHLQIP VA+NDDGKIVLVS EDGQK     VNKEKRKL
Sbjct: 154 YCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQKP----VNKEKRKL 209

Query: 228 TLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAYTSA 287
           TLR+IPFSLTCIL+KNYILADPTAEEESIMETH+TIVL+TSGQLISLYKPGGP LAYTSA
Sbjct: 210 TLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGGPALAYTSA 269

Query: 288 LQDCVPLTRQRVKELKSFLDKENSAAMEV 316
           +QDCV LT QRVKELKS+LDKENS AMEV
Sbjct: 270 IQDCVGLTGQRVKELKSYLDKENS-AMEV 297



 Score =  152 bits (383), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 75/85 (88%), Gaps = 7/85 (8%)

Query: 16  TMLTAIKMEVMTPSLESPDEGCIAIDFHMPPICSPIVRPGRPAEASPVVSKH-------S 68
           TMLTAIKMEVMTPSLESPDEGC+AIDFHMPPICSPIVRPGRPAEASPVVSK        S
Sbjct: 71  TMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSS 130

Query: 69  GMIDLKELSLVSGKAAWMAYLDVYC 93
            MIDLKELSLV GKAAWMAYLD+YC
Sbjct: 131 RMIDLKELSLVGGKAAWMAYLDIYC 155


>Glyma14g22250.1 
          Length = 307

 Score =  303 bits (777), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 169/217 (77%), Gaps = 20/217 (9%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSKH-------SGMIDLKELSLVSGKAAWMAYL-- 165
           +IDFHMPPICSPIVRPGRPAEASPVVSK        S MIDLKELSLV GKAAWMAYL  
Sbjct: 94  AIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKAAWMAYLNA 153

Query: 166 ------DVYCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQEL 219
                 D+YC                   SHLQIP VA+NDDGKIVLVS EDGQK     
Sbjct: 154 AFSIMQDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQKP---- 209

Query: 220 VNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGG 279
           VNKEKRKLTLR+IPFSLTCIL+KNYILADPTAEEESIMETH+TIVL+TSGQLISLYKPGG
Sbjct: 210 VNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGG 269

Query: 280 PVLAYTSALQDCVPLTRQRVKELKSFLDKENSAAMEV 316
           P LAYTSA+QDCV LT QRVKELKS+LDKENS AMEV
Sbjct: 270 PALAYTSAIQDCVGLTGQRVKELKSYLDKENS-AMEV 305



 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 75/93 (80%), Gaps = 15/93 (16%)

Query: 16  TMLTAIKMEVMTPSLESPDEGCIAIDFHMPPICSPIVRPGRPAEASPVVSKH-------S 68
           TMLTAIKMEVMTPSLESPDEGC+AIDFHMPPICSPIVRPGRPAEASPVVSK        S
Sbjct: 71  TMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSS 130

Query: 69  GMIDLKELSLVSGKAAWMAYL--------DVYC 93
            MIDLKELSLV GKAAWMAYL        D+YC
Sbjct: 131 RMIDLKELSLVGGKAAWMAYLNAAFSIMQDIYC 163


>Glyma11g01740.1 
          Length = 1058

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 20/200 (10%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSK-------HSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP++A+  + +        S  ID + L ++SGK  W   +D+
Sbjct: 702 SIFTEFSPMADPSFDPGRPSDAAVELGRVVDRGLRESRAIDTESLCVLSGKLVWAIRVDI 761

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAI-NDDGKIVLVSDEDGQKQAQELVNKEKRK 226
           +                       + P  ++  +DG+ V+V   +          ++   
Sbjct: 762 HILDNAGNLVDAANIAALASLLTFRRPECSLAGEDGQDVVVHPPE---------ERDPIP 812

Query: 227 LTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAY 284
           L + ++P ++T   +  +N ++ DPT  EE +M   MT  LN++G + ++ KPGG  +++
Sbjct: 813 LIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVCAIQKPGGESVSH 872

Query: 285 TSALQDCVPLTRQRVKELKS 304
            S +  C+ L   +  ++ +
Sbjct: 873 -SVIMHCLKLAHVKATDITT 891


>Glyma01g43760.1 
          Length = 350

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSK-------HSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP +A+  + +        S  ID + L ++SGK  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPTDAAVELGRVVDRGLRESRAIDTESLCVLSGKLVWAIRVDI 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAI-NDDGKIVLVSDEDGQKQAQELVNKEKRK 226
           +                       + P  ++  +DG+ V+V   +          ++   
Sbjct: 142 HILDNAGNLVDAANIAALVSLLTFRRPECSLTGEDGQDVVVHPPE---------ERDPIP 192

Query: 227 LTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAY 284
           L + ++P ++T   +  +N ++ DPT  EE +M   MT  LN++G + ++ KPGG  ++ 
Sbjct: 193 LIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVCAIQKPGGESVSQ 252

Query: 285 TSALQDCVPLTRQRVKELKS 304
            S +  C+ L   +  ++ +
Sbjct: 253 -SVIMHCLKLAHVKATDITT 271


>Glyma02g07710.1 
          Length = 286

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 18/178 (10%)

Query: 141 SKHSGMIDLKELSLVSGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXSHLQIPHVAI-- 198
           S     IDL  L +V GK  W  Y+D                      S+  IP V +  
Sbjct: 116 SGEGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVEVAA 175

Query: 199 ---NDDGKIVLVSDEDGQKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEES 255
              ND+   V VSDE            E  +     +P  +T      + + D T+EEES
Sbjct: 176 GTSNDEHPEVDVSDE------------EFLQFDTSRVPVIVTLTKVGRHYIVDATSEEES 223

Query: 256 IMETHMTIVLNTSGQLISLYKPGGPVLAYTSALQDCVPLTRQRVKELKSFLDKENSAA 313
            M + ++I +N  G +  + K GG  L   S + D + + +   ++L + LD E ++A
Sbjct: 224 QMSSGVSISVNRQGHICGITKRGGVGLD-PSIILDMISVAKHVSEQLINKLDSEIASA 280