Miyakogusa Predicted Gene

Lj4g3v0987840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0987840.1 Non Characterized Hit- tr|Q5JXM0|Q5JXM0_HUMAN
Putative uncharacterized protein DKFZp564C0482
OS=Homo,32.98,1e-18,EXOSOME COMPLEX EXONUCLEASE RRP43 (RIBOSOMAL RNA
PROCESSING PROTEIN 43),NULL; EXOSOME COMPLEX EXONUC,gene.g53648.t1.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g007060.1 | exosome complex exonuclease RRP46 | HC | chr1:...   323   9e-89
Medtr1g007060.2 | exosome complex exonuclease RRP46 | HC | chr1:...   276   2e-74
Medtr2g019210.2 | exosome complex exonuclease RRP41 | HC | chr2:...    60   2e-09
Medtr2g019210.3 | exosome complex exonuclease RRP41 | HC | chr2:...    60   2e-09
Medtr2g019210.1 | exosome complex exonuclease RRP41 | HC | chr2:...    60   4e-09
Medtr1g063090.1 | exosome complex exonuclease RRP41 | HC | chr1:...    56   5e-08

>Medtr1g007060.1 | exosome complex exonuclease RRP46 | HC |
           chr1:171864-178799 | 20130731
          Length = 304

 Score =  323 bits (829), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 162/210 (77%), Positives = 176/210 (83%), Gaps = 8/210 (3%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSKH-------SGMIDLKELSLVSGKAAWMAYLDV 167
           +IDFHMPPICSPIVRPGRPAEA PVVSK        SGMIDL+ELSLV GKAAWMAYLD+
Sbjct: 96  AIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDTITSSGMIDLRELSLVGGKAAWMAYLDI 155

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVNKEKRKL 227
           YC                   SHLQIP VA+NDDGKIVL+SDEDGQKQA+E VNKEKRKL
Sbjct: 156 YCLDADGSLFDAALLSAVAALSHLQIPAVAMNDDGKIVLMSDEDGQKQAKEQVNKEKRKL 215

Query: 228 TLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAYTSA 287
           TL++IP SLTCIL+KNYILADPTAEEESI+ETH+TI+L+TSGQLISLYKPGGPVLAYTSA
Sbjct: 216 TLKSIPLSLTCILHKNYILADPTAEEESIVETHVTIILDTSGQLISLYKPGGPVLAYTSA 275

Query: 288 LQDCVPLTRQRVKELKSFLDKENSAAMEVE 317
           +QDCV LTRQRVKELKSFLDKENS AMEVE
Sbjct: 276 IQDCVALTRQRVKELKSFLDKENS-AMEVE 304



 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 74/85 (87%), Gaps = 7/85 (8%)

Query: 16  TMLTAIKMEVMTPSLESPDEGCIAIDFHMPPICSPIVRPGRPAEASPVVSKH-------S 68
           TMLTAIKMEVM PSLESPDEGC+AIDFHMPPICSPIVRPGRPAEA PVVSK        S
Sbjct: 73  TMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDTITSS 132

Query: 69  GMIDLKELSLVSGKAAWMAYLDVYC 93
           GMIDL+ELSLV GKAAWMAYLD+YC
Sbjct: 133 GMIDLRELSLVGGKAAWMAYLDIYC 157


>Medtr1g007060.2 | exosome complex exonuclease RRP46 | HC |
           chr1:171864-178056 | 20130731
          Length = 284

 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 150/182 (82%), Gaps = 7/182 (3%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSKH-------SGMIDLKELSLVSGKAAWMAYLDV 167
           +IDFHMPPICSPIVRPGRPAEA PVVSK        SGMIDL+ELSLV GKAAWMAYLD+
Sbjct: 96  AIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDTITSSGMIDLRELSLVGGKAAWMAYLDI 155

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVNKEKRKL 227
           YC                   SHLQIP VA+NDDGKIVL+SDEDGQKQA+E VNKEKRKL
Sbjct: 156 YCLDADGSLFDAALLSAVAALSHLQIPAVAMNDDGKIVLMSDEDGQKQAKEQVNKEKRKL 215

Query: 228 TLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAYTSA 287
           TL++IP SLTCIL+KNYILADPTAEEESI+ETH+TI+L+TSGQLISLYKPGGPVLAYTSA
Sbjct: 216 TLKSIPLSLTCILHKNYILADPTAEEESIVETHVTIILDTSGQLISLYKPGGPVLAYTSA 275

Query: 288 LQ 289
           +Q
Sbjct: 276 IQ 277



 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 74/85 (87%), Gaps = 7/85 (8%)

Query: 16  TMLTAIKMEVMTPSLESPDEGCIAIDFHMPPICSPIVRPGRPAEASPVVSKH-------S 68
           TMLTAIKMEVM PSLESPDEGC+AIDFHMPPICSPIVRPGRPAEA PVVSK        S
Sbjct: 73  TMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDTITSS 132

Query: 69  GMIDLKELSLVSGKAAWMAYLDVYC 93
           GMIDL+ELSLV GKAAWMAYLD+YC
Sbjct: 133 GMIDLRELSLVGGKAAWMAYLDIYC 157


>Medtr2g019210.2 | exosome complex exonuclease RRP41 | HC |
           chr2:6209367-6213281 | 20130731
          Length = 364

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 26/206 (12%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSK-------HSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP E++  + +        S  ID + L ++S K  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDI 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVN----KE 223
           +                       + P  ++           EDGQ   Q +V+    +E
Sbjct: 142 HILDNAGNLVDAANIAALASLKTFRRPECSL---------GGEDGQ---QVVVHPPEVRE 189

Query: 224 KRKLTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPV 281
              L + ++P ++T   +  +N ++ DPT  EE++M   MT  LN +G + ++ KPGG  
Sbjct: 190 PLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQG 249

Query: 282 LAYTSALQDCVPLTRQRVKELKSFLD 307
           + +   +  C+ L   +  ++ S ++
Sbjct: 250 V-FQRVIMHCLKLAHVKAGDITSKIN 274


>Medtr2g019210.3 | exosome complex exonuclease RRP41 | HC |
           chr2:6209367-6212019 | 20130731
          Length = 364

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 26/206 (12%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSK-------HSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP E++  + +        S  ID + L ++S K  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDI 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVN----KE 223
           +                       + P  ++           EDGQ   Q +V+    +E
Sbjct: 142 HILDNAGNLVDAANIAALASLKTFRRPECSL---------GGEDGQ---QVVVHPPEVRE 189

Query: 224 KRKLTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPV 281
              L + ++P ++T   +  +N ++ DPT  EE++M   MT  LN +G + ++ KPGG  
Sbjct: 190 PLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQG 249

Query: 282 LAYTSALQDCVPLTRQRVKELKSFLD 307
           + +   +  C+ L   +  ++ S ++
Sbjct: 250 V-FQRVIMHCLKLAHVKAGDITSKIN 274


>Medtr2g019210.1 | exosome complex exonuclease RRP41 | HC |
           chr2:6209449-6213016 | 20130731
          Length = 449

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 26/206 (12%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSK-------HSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP E++  + +        S  ID + L ++S K  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDI 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVN----KE 223
           +                       + P  ++           EDGQ   Q +V+    +E
Sbjct: 142 HILDNAGNLVDAANIAALASLKTFRRPECSL---------GGEDGQ---QVVVHPPEVRE 189

Query: 224 KRKLTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPV 281
              L + ++P ++T   +  +N ++ DPT  EE++M   MT  LN +G + ++ KPGG  
Sbjct: 190 PLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQG 249

Query: 282 LAYTSALQDCVPLTRQRVKELKSFLD 307
           + +   +  C+ L   +  ++ S ++
Sbjct: 250 V-FQRVIMHCLKLAHVKAGDITSKIN 274


>Medtr1g063090.1 | exosome complex exonuclease RRP41 | HC |
           chr1:27736500-27739997 | 20130731
          Length = 298

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 26/203 (12%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSK-------HSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP E++  + +        S  ID + L ++S K  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCVLSAKLVWAIRIDI 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVN----KE 223
           +                    S  +    ++           EDGQ   Q +V+    +E
Sbjct: 142 HILDNAGNLVDAANIAALASLSTFRRSECSL---------GGEDGQ---QVVVHPPEVRE 189

Query: 224 KRKLTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPV 281
              L + ++P ++T   +  +N ++ DPT  EE++M   MT+ LN +G + ++ KPG   
Sbjct: 190 PLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGSMTVTLNANGDVCAIQKPGRQG 249

Query: 282 LAYTSALQDCVPLTRQRVKELKS 304
           + +   +  C+ L   +  ++ +
Sbjct: 250 I-FQRVIMHCLKLAHVKAADITT 271