Miyakogusa Predicted Gene

Lj4g3v0987840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0987840.1 Non Chatacterized Hit- tr|Q5JXM0|Q5JXM0_HUMAN
Putative uncharacterized protein DKFZp564C0482
OS=Homo,32.98,1e-18,EXOSOME COMPLEX EXONUCLEASE RRP43 (RIBOSOMAL RNA
PROCESSING PROTEIN 43),NULL; EXOSOME COMPLEX EXONUC,gene.g53648.t1.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60080.1 | Symbols:  | 3'-5'-exoribonuclease family protein |...   250   1e-66
AT3G60500.3 | Symbols: CER7 | 3'-5'-exoribonuclease family prote...    53   3e-07
AT3G60500.2 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family p...    53   3e-07
AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family p...    53   3e-07
AT3G07750.2 | Symbols:  | 3'-5'-exoribonuclease family protein |...    48   7e-06
AT3G07750.1 | Symbols:  | 3'-5'-exoribonuclease family protein |...    48   7e-06

>AT1G60080.1 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr1:22152605-22154339 REVERSE LENGTH=302
          Length = 302

 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 148/203 (72%), Gaps = 11/203 (5%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVSKH-------SGMIDLKELSLVSGKAAWMAYLDV 167
           +I+FHMPPICSP VRPGRPAEA+PV+SK        SGMIDLKEL LVSGKAAWM YLD+
Sbjct: 94  AIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDI 153

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVLVSDEDGQKQA----QELVNKE 223
           YC                   S+LQIP VA+ND+G+IV V+ E  Q  A    +E VNKE
Sbjct: 154 YCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALITEKEAVNKE 213

Query: 224 KRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLA 283
           KRKLTL+NIPFSLTCIL+KNYILADPT EEESIM+T +T+VL++S Q++S YK GG  LA
Sbjct: 214 KRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALA 273

Query: 284 YTSALQDCVPLTRQRVKELKSFL 306
           Y+SA++ CV L R+R KELK  L
Sbjct: 274 YSSAIKSCVELARKRAKELKQIL 296



 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 72/85 (84%), Gaps = 7/85 (8%)

Query: 16  TMLTAIKMEVMTPSLESPDEGCIAIDFHMPPICSPIVRPGRPAEASPVVSKH-------S 68
           TML AI+MEVMTPS +SPDEGCIAI+FHMPPICSP VRPGRPAEA+PV+SK        S
Sbjct: 71  TMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSS 130

Query: 69  GMIDLKELSLVSGKAAWMAYLDVYC 93
           GMIDLKEL LVSGKAAWM YLD+YC
Sbjct: 131 GMIDLKELCLVSGKAAWMGYLDIYC 155


>AT3G60500.3 | Symbols: CER7 | 3'-5'-exoribonuclease family protein
           | chr3:22354245-22356440 FORWARD LENGTH=438
          Length = 438

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVS-------KHSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP E++  +        + S  +D + L +++GK  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSVRIDL 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAI-NDDGKIVLVSDEDGQKQAQELVNKEKRK 226
           +                       + P   +  ++G+ V++           L  +E   
Sbjct: 142 HILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVII---------HPLEEREPLP 192

Query: 227 LTLRNIPFSLTCILYK--NYILADPTAEEESIMETHMTIVLNTSGQLISLYKPG 278
           L + ++P + T   +   N ++ DPT  EE++M   MT+ +N +G + ++ KPG
Sbjct: 193 LIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPG 246


>AT3G60500.2 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
           protein | chr3:22354245-22356440 FORWARD LENGTH=438
          Length = 438

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVS-------KHSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP E++  +        + S  +D + L +++GK  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSVRIDL 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAI-NDDGKIVLVSDEDGQKQAQELVNKEKRK 226
           +                       + P   +  ++G+ V++           L  +E   
Sbjct: 142 HILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVII---------HPLEEREPLP 192

Query: 227 LTLRNIPFSLTCILYK--NYILADPTAEEESIMETHMTIVLNTSGQLISLYKPG 278
           L + ++P + T   +   N ++ DPT  EE++M   MT+ +N +G + ++ KPG
Sbjct: 193 LIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPG 246


>AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
           protein | chr3:22354245-22356440 FORWARD LENGTH=438
          Length = 438

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 115 SIDFHMPPICSPIVRPGRPAEASPVVS-------KHSGMIDLKELSLVSGKAAWMAYLDV 167
           SI     P+  P   PGRP E++  +        + S  +D + L +++GK  W   +D+
Sbjct: 82  SIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSVRIDL 141

Query: 168 YCXXXXXXXXXXXXXXXXXXXSHLQIPHVAI-NDDGKIVLVSDEDGQKQAQELVNKEKRK 226
           +                       + P   +  ++G+ V++           L  +E   
Sbjct: 142 HILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVII---------HPLEEREPLP 192

Query: 227 LTLRNIPFSLTCILYK--NYILADPTAEEESIMETHMTIVLNTSGQLISLYKPG 278
           L + ++P + T   +   N ++ DPT  EE++M   MT+ +N +G + ++ KPG
Sbjct: 193 LIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPG 246


>AT3G07750.2 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr3:2473486-2475218 FORWARD LENGTH=286
          Length = 286

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 8/171 (4%)

Query: 147 IDLKELSLVSGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVL 206
           I+L  L +  GK  W  Y+D                      ++  IP V ++ +     
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAE----- 175

Query: 207 VSDEDGQKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLN 266
           V+D+  ++   ++ ++E  +    ++P  +T      + + D TAEEES M + ++I +N
Sbjct: 176 VADD--EQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVN 233

Query: 267 TSGQLISLYKPGGPVLAYTSALQDCVPLTRQRVKELKSFLDKENSAAMEVE 317
            +G +  L K  G  L   S + D + + +   + L S LD E SAA   E
Sbjct: 234 RTGHICGLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAEACE 283


>AT3G07750.1 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr3:2473486-2475218 FORWARD LENGTH=286
          Length = 286

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 8/171 (4%)

Query: 147 IDLKELSLVSGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXSHLQIPHVAINDDGKIVL 206
           I+L  L +  GK  W  Y+D                      ++  IP V ++ +     
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAE----- 175

Query: 207 VSDEDGQKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLN 266
           V+D+  ++   ++ ++E  +    ++P  +T      + + D TAEEES M + ++I +N
Sbjct: 176 VADD--EQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVN 233

Query: 267 TSGQLISLYKPGGPVLAYTSALQDCVPLTRQRVKELKSFLDKENSAAMEVE 317
            +G +  L K  G  L   S + D + + +   + L S LD E SAA   E
Sbjct: 234 RTGHICGLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAEACE 283