Miyakogusa Predicted Gene
- Lj4g3v0987840.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0987840.1 Non Chatacterized Hit- tr|Q5JXM0|Q5JXM0_HUMAN
Putative uncharacterized protein DKFZp564C0482
OS=Homo,32.98,1e-18,EXOSOME COMPLEX EXONUCLEASE RRP43 (RIBOSOMAL RNA
PROCESSING PROTEIN 43),NULL; EXOSOME COMPLEX EXONUC,gene.g53648.t1.1
(954 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75646 similar to UniRef100_Q2PYZ2 Cluster: 3'-5'-exor... 1017 0.0
gnl|LJGI|AV773653 similar to UniRef100_Q2G6N8 Cluster: TPR repea... 84 2e-15
gnl|LJGI|DC596983 similar to UniRef100_A7PWG2 Cluster: Chromosom... 74 2e-12
>gnl|LJGI|TC75646 similar to UniRef100_Q2PYZ2 Cluster: 3'-5'-exoribonuclease/RNA
binding protein-like protein; n=1; Solanum
tuberosum|Rep: 3'-5'-exoribonuclease/RNA binding
protein-like protein - Solanum tuberosum (Potato),
partial (63%)
Length = 846
Score = 1017 bits (513), Expect = 0.0
Identities = 600/633 (94%), Gaps = 22/633 (3%)
Strand = Plus / Plus
Query: 344 ctattgatttccacatgcctccaatttgttctccaattgttaggcctggcaggcctgctg 403
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 78 ctattgatttccacatgcctccaatttgttctccaattgttaggcccggaaggcctgctg 137
Query: 404 aagcatcaccagttgtgtcaaagca---------------------ttctggaatgattg 442
||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 138 aagcatcaccagttgtgacaaagcagttgtctgacaccatttcaagttctggaatgattg 197
Query: 443 atttgaaagaattgtccttggtcagtgggaaagctgcatggatggcttacttggatgtct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atttgaaagaattgtccttggtcagtgggaaagctgcatggatggcttacttggatgtct 257
Query: 503 attgtttggatgctgatggtgctctttttgatgctgctttactttctgcagctgctgcct 562
|||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
Sbjct: 258 attgtttggatgctgatggtgctctttttggtgctgctttactttctgtagttgctgctt 317
Query: 563 tatctcatctgcaaattcct-catgttgctataaacgatgacggcaaaatagtactcgtg 621
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 tatctcatttgcaaattccttcatgttgctatgaacgatgacggcaaaatagtactcgtg 377
Query: 622 tctgatgaagatggacaaaagcaggcacaagagctggttaataaggaaaagaggaagctt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctgatgaagatggacaaaagcaggcacaagagctggttaataaggaaaagaggaagctt 437
Query: 682 acactaagaaacattccattctcattaacatgcatactttacaaaaattacatcttggca 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acactaagaaacattccattctcattaacatgcatactttacaaaaattacatcttggca 497
Query: 742 gatcctactgcagaagaagaatccattatggaaacccatatgactatagttttgaataca 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gatcctactgcagaagaagaatccattatggaaacccatatgactatagttttgaataca 557
Query: 802 tctggtcaacttatatctctttacaagcctggcgggccagttcttgcctatacttctgct 861
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 tctggtcaacttatatctctttacaagcctggcgggccagttcttgtctatacttctgct 617
Query: 862 ctccaggactgtgttccattgaccaggcaaagagttaaagaacttaagagcttcttagac 921
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 618 ctccaggactgtgttccattgaccaggcaaagagttaaagaacttaagggcttcttagac 677
Query: 922 aaagaaaattctgctgctatggaggttgagtag 954
|||||||||||||||||||||||||||||||||
Sbjct: 678 aaagaaaattctgctgctatggaggttgagtag 710
Score = 442 bits (223), Expect = e-123
Identities = 291/319 (91%), Gaps = 21/319 (6%)
Strand = Plus / Plus
Query: 46 actatgttgactgcaattaaaatggaagttatgactccctccttggagtcaccagatgag 105
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 8 actatgttgactgcaataaaaatggaagttatggctccctccttggagtcaccagatgtg 67
Query: 106 ggttgtatagctattgatttccacatgcctccaatttgttctccaattgttaggcctggc 165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 68 ggttgtatagctattgatttccacatgcctccaatttgttctccaattgttaggcccgga 127
Query: 166 aggcctgctgaagcatcaccagttgtgtcaaagca---------------------ttct 204
||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 128 aggcctgctgaagcatcaccagttgtgacaaagcagttgtctgacaccatttcaagttct 187
Query: 205 ggaatgattgatttgaaagaattgtccttggtcagtgggaaagctgcatggatggcttac 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggaatgattgatttgaaagaattgtccttggtcagtgggaaagctgcatggatggcttac 247
Query: 265 ttggatgtctattgtttggatgctgatggtgctctttttgatgctgctttactttctgta 324
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 248 ttggatgtctattgtttggatgctgatggtgctctttttggtgctgctttactttctgta 307
Query: 325 gttgctgctttatctcatt 343
|||||||||||||||||||
Sbjct: 308 gttgctgctttatctcatt 326
>gnl|LJGI|AV773653 similar to UniRef100_Q2G6N8 Cluster: TPR repeat protein; n=1;
Novosphingobium aromaticivorans DSM 12444|Rep: TPR
repeat protein - Novosphingobium aromaticivorans (strain
DSM 12444), partial (5%)
Length = 214
Score = 83.8 bits (42), Expect = 2e-15
Identities = 95/110 (86%), Gaps = 2/110 (1%)
Strand = Plus / Minus
Query: 847 gcctatacttctgctctcca-ggactgtgttccattgaccaggcaaagagttaaagaact 905
|||||||||||||||||||| |||||||||| | |||||| ||| |||||||||| |||
Sbjct: 214 gcctatacttctgctctccacggactgtgttgccttgacccggcccagagttaaagtact 155
Query: 906 taagagcttcttagacaaagaa-aattctgctgctatggaggttgagtag 954
||||||| |||||| | |||| ||||| ||||||||||| ||||||||
Sbjct: 154 taagagcctcttagtccgagaacaattcggctgctatggaaattgagtag 105
>gnl|LJGI|DC596983 similar to UniRef100_A7PWG2 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (40%)
Length = 323
Score = 73.8 bits (37), Expect = 2e-12
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 1 atggtagacctcttgcgaaagcaagagatacaagcatatttcttg 45
|||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 266 atggtagaccacttgcgaaagcgagagatacaagcatatttcttg 310