Miyakogusa Predicted Gene

Lj4g3v0818950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0818950.1 tr|A9TMQ8|A9TMQ8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147793,54.65,7e-18,P-loop containing nucleoside
triphosphate hydrolases,NULL; no description,NULL;
CLEAVAGE/POLYADENYLA,CUFF.48083.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11010.3 | Symbols:  | Pre-mRNA cleavage complex II protein f...   105   4e-24
AT5G11010.2 | Symbols:  | Pre-mRNA cleavage complex II protein f...   105   4e-24
AT5G11010.1 | Symbols:  | Pre-mRNA cleavage complex II protein f...   105   4e-24

>AT5G11010.3 | Symbols:  | Pre-mRNA cleavage complex II protein
          family | chr5:3484176-3486067 FORWARD LENGTH=368
          Length = 368

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 60/76 (78%), Gaps = 1/76 (1%)

Query: 12 YIPEQWSEAAGSIADSSTPP-ITLICGAKNCGKTIFSRYLLNVLLHRYSRVAYLDTDVGQ 70
          +IPE+WS AA S++ SS  P I L+CG KN GK+ FSR L+ VLL RY RVAYLDTDVGQ
Sbjct: 10 FIPEEWSNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQ 69

Query: 71 PEFTAPAFLSLTIVHQ 86
          PEFTAP FLSLTIV +
Sbjct: 70 PEFTAPGFLSLTIVDK 85


>AT5G11010.2 | Symbols:  | Pre-mRNA cleavage complex II protein
          family | chr5:3484176-3486067 FORWARD LENGTH=368
          Length = 368

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 60/76 (78%), Gaps = 1/76 (1%)

Query: 12 YIPEQWSEAAGSIADSSTPP-ITLICGAKNCGKTIFSRYLLNVLLHRYSRVAYLDTDVGQ 70
          +IPE+WS AA S++ SS  P I L+CG KN GK+ FSR L+ VLL RY RVAYLDTDVGQ
Sbjct: 10 FIPEEWSNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQ 69

Query: 71 PEFTAPAFLSLTIVHQ 86
          PEFTAP FLSLTIV +
Sbjct: 70 PEFTAPGFLSLTIVDK 85


>AT5G11010.1 | Symbols:  | Pre-mRNA cleavage complex II protein
          family | chr5:3484176-3485831 FORWARD LENGTH=318
          Length = 318

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 60/76 (78%), Gaps = 1/76 (1%)

Query: 12 YIPEQWSEAAGSIADSSTPP-ITLICGAKNCGKTIFSRYLLNVLLHRYSRVAYLDTDVGQ 70
          +IPE+WS AA S++ SS  P I L+CG KN GK+ FSR L+ VLL RY RVAYLDTDVGQ
Sbjct: 10 FIPEEWSNAASSVSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQ 69

Query: 71 PEFTAPAFLSLTIVHQ 86
          PEFTAP FLSLTIV +
Sbjct: 70 PEFTAPGFLSLTIVDK 85