Miyakogusa Predicted Gene

Lj4g3v0668410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0668410.1 tr|A9RG30|A9RG30_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65655
,44.44,5e-18, ,CUFF.47857.1
         (243 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g083300.1 | transmembrane protein, putative | HC | chr4:32...   389   e-108

>Medtr4g083300.1 | transmembrane protein, putative | HC |
           chr4:32410694-32415452 | 20130731
          Length = 317

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/239 (82%), Positives = 210/239 (87%), Gaps = 2/239 (0%)

Query: 1   MVLCGCSFCFNL--RDRIQPWIRDYDRLQSFAVILIYIQIGCALIGSLGALYNGVSLINV 58
           M+LC CS   NL  RDRIQPW+RDYD LQSFA+ILIYIQIGCAL+GSLGA YNGVSLIN+
Sbjct: 1   MMLCCCSLNLNLNLRDRIQPWLRDYDSLQSFAIILIYIQIGCALLGSLGASYNGVSLINL 60

Query: 59  AIALFALVAIESSSQSLGRTYAFLLFCAILLDISWFILFTHEIWNISEASYAAFFIFSVK 118
           AI+LFALVAIESSSQSLGRTYAFLLFC+ILLDISWFILFTHEIWNIS   YA FFIFSVK
Sbjct: 61  AISLFALVAIESSSQSLGRTYAFLLFCSILLDISWFILFTHEIWNISSDDYAKFFIFSVK 120

Query: 119 LTLAMQIVGFIVRLFSSLLWIQIYRLGASYVDTASRVADFDLRNSFLSPVAPPVVRQCSN 178
           LTLAMQI+GFIVRL SSLLWIQIYRLGASYVDTASR ADFDLR+SFLSPV P V RQ SN
Sbjct: 121 LTLAMQIIGFIVRLSSSLLWIQIYRLGASYVDTASRAADFDLRSSFLSPVTPAVARQISN 180

Query: 179 SNEILGGSIYDPAYYSSLFEDGQENKYTSGMCNNDITQNESTSASNGSQKSSKCKSFQA 237
           SNEILGGSIYDPAYYSSLFED QENK T GM N+DITQN STSA+  S K+S   SFQA
Sbjct: 181 SNEILGGSIYDPAYYSSLFEDSQENKSTCGMPNHDITQNGSTSATGVSPKTSTEISFQA 239