Miyakogusa Predicted Gene
- Lj4g3v0668410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0668410.1 tr|A9RG30|A9RG30_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65655
,44.44,5e-18, ,CUFF.47857.1
(243 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55535.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 311 2e-85
AT1G55535.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 311 3e-85
AT3G13420.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 255 2e-68
>AT1G55535.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: cultured cell;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G13420.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr1:20732081-20733802 REVERSE LENGTH=260
Length = 260
Score = 311 bits (797), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/246 (65%), Positives = 188/246 (76%), Gaps = 10/246 (4%)
Query: 1 MVLCGCSFCFNLRDRIQPWIRDYDRLQSFAVILIYIQIGCALIGSLGALYNGVSLINVAI 60
M+LCG +LRDRI PW+RDY +LQS AV LIY QIGCALIGSLGALYNGV LIN+AI
Sbjct: 1 MMLCG-----SLRDRIHPWLRDYVKLQSLAVFLIYAQIGCALIGSLGALYNGVLLINLAI 55
Query: 61 ALFALVAIESSSQSLGRTYAFLLFCAILLDISWFILFTHEIWNISEASYAAFFIFSVKLT 120
ALFALVAIES+SQSLGRTYA LLFCA+LLDISWFILFT EIW+IS +Y FFIFSVKLT
Sbjct: 56 ALFALVAIESNSQSLGRTYAVLLFCALLLDISWFILFTEEIWSISAETYGTFFIFSVKLT 115
Query: 121 LAMQIVGFIVRLFSSLLWIQIYRLGASYVDTA-SRVADFDLRNSFLSPVAPPVVRQCSNS 179
+AM+++GF VRL SSLLW QIYRLGA+ VDT+ R D DLRNSFL+P P + RQCS +
Sbjct: 116 MAMEMIGFFVRLSSSLLWFQIYRLGAAIVDTSLPRETDSDLRNSFLNPPTPAIARQCSGA 175
Query: 180 NEILGGSIYDPAYYSSLFEDGQEN---KYTSGMCNNDITQNESTSASNGSQ-KSSKCKSF 235
EILGGSIYDPAYY+SLFE+ Q N + + + N S SA+ S KS +S
Sbjct: 176 EEILGGSIYDPAYYTSLFEESQTNINSPKATQVNHYSAGNNGSPSAAEASHIKSPIFRSL 235
Query: 236 QAVDEE 241
++DEE
Sbjct: 236 HSIDEE 241
>AT1G55535.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: cultured cell;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G13420.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr1:20732107-20733802 REVERSE LENGTH=250
Length = 250
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/246 (65%), Positives = 188/246 (76%), Gaps = 10/246 (4%)
Query: 1 MVLCGCSFCFNLRDRIQPWIRDYDRLQSFAVILIYIQIGCALIGSLGALYNGVSLINVAI 60
M+LCG +LRDRI PW+RDY +LQS AV LIY QIGCALIGSLGALYNGV LIN+AI
Sbjct: 1 MMLCG-----SLRDRIHPWLRDYVKLQSLAVFLIYAQIGCALIGSLGALYNGVLLINLAI 55
Query: 61 ALFALVAIESSSQSLGRTYAFLLFCAILLDISWFILFTHEIWNISEASYAAFFIFSVKLT 120
ALFALVAIES+SQSLGRTYA LLFCA+LLDISWFILFT EIW+IS +Y FFIFSVKLT
Sbjct: 56 ALFALVAIESNSQSLGRTYAVLLFCALLLDISWFILFTEEIWSISAETYGTFFIFSVKLT 115
Query: 121 LAMQIVGFIVRLFSSLLWIQIYRLGASYVDTA-SRVADFDLRNSFLSPVAPPVVRQCSNS 179
+AM+++GF VRL SSLLW QIYRLGA+ VDT+ R D DLRNSFL+P P + RQCS +
Sbjct: 116 MAMEMIGFFVRLSSSLLWFQIYRLGAAIVDTSLPRETDSDLRNSFLNPPTPAIARQCSGA 175
Query: 180 NEILGGSIYDPAYYSSLFEDGQEN---KYTSGMCNNDITQNESTSASNGSQ-KSSKCKSF 235
EILGGSIYDPAYY+SLFE+ Q N + + + N S SA+ S KS +S
Sbjct: 176 EEILGGSIYDPAYYTSLFEESQTNINSPKATQVNHYSAGNNGSPSAAEASHIKSPIFRSL 235
Query: 236 QAVDEE 241
++DEE
Sbjct: 236 HSIDEE 241
>AT3G13420.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G55535.1); Has 66 Blast hits to 66 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr3:4364723-4365892 FORWARD
LENGTH=242
Length = 242
Score = 255 bits (651), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/215 (63%), Positives = 156/215 (72%), Gaps = 19/215 (8%)
Query: 8 FCFNLRDRIQPWIRDYDRLQSFAVILIYIQIGCALIGSLGALYNGVSLINVAIALFALVA 67
C +LR+RI W+RDY RLQS +ILIY QIGCALIGSLGALYNGV LIN+AIALF LVA
Sbjct: 2 LCVSLRNRIHNWLRDYVRLQSVVLILIYAQIGCALIGSLGALYNGVVLINLAIALFGLVA 61
Query: 68 IESSSQSLGRTYAFLLFCAILLDISWFILFTHEIWNISEASYAAFFIFSVKLTLAMQIVG 127
IES+SQSLGRTYA LLFCAILLD+SWFILF+ EIWNIS Y F+IFSVKLTLAM+I G
Sbjct: 62 IESNSQSLGRTYAVLLFCAILLDVSWFILFSKEIWNISSDMYQVFYIFSVKLTLAMEIAG 121
Query: 128 FIVRLFSSLLWIQIYRLGASYVDTA-SRVADFDLRNSFLSPV------------------ 168
F+VRL SSLLW QIYRLGAS +D+ R +D DLRNSFL P
Sbjct: 122 FVVRLSSSLLWFQIYRLGASIIDSPFPRQSDSDLRNSFLEPPLLARQRSRDPELRNSFLQ 181
Query: 169 APPVVRQCSNSNEILGGSIYDPAYYSSLFEDGQEN 203
AP + +Q S S+EIL SI +PA Y+ L + G N
Sbjct: 182 APAIAKQRSRSDEILEDSIDEPASYTPLLDGGLSN 216