Miyakogusa Predicted Gene

Lj4g3v0513460.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0513460.2 Non Chatacterized Hit- tr|I3SIF6|I3SIF6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.2,0,HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix domain; FAMILY
NOT NAMED,NULL; HLH,Helix-l,CUFF.47555.2
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05710.5 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   175   1e-44
AT1G05710.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   175   1e-44
AT1G05710.4 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   175   1e-44
AT1G05710.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   175   1e-44
AT1G05710.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   162   1e-40
AT2G31730.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   154   4e-38
AT3G19500.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   117   4e-27
AT3G20640.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   112   9e-26
AT2G20100.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   101   2e-22
AT1G61660.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   101   3e-22
AT1G61660.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   101   3e-22
AT4G29100.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    96   1e-20
AT1G49830.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    92   1e-19
AT1G31050.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    90   6e-19
AT1G27660.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    88   3e-18
AT4G21340.1 | Symbols: B70 | basic helix-loop-helix (bHLH) DNA-b...    85   3e-17
AT4G05170.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    81   3e-16
AT2G20100.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    79   2e-15
AT1G61660.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    77   5e-15
AT1G61660.4 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    74   3e-14
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508...    53   9e-08
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032...    53   1e-07
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348...    53   1e-07
AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    52   3e-07
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr...    52   3e-07
AT2G14760.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    52   3e-07
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr...    50   8e-07
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin...    50   1e-06
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin...    50   1e-06
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503...    49   2e-06
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact...    48   3e-06
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b...    48   3e-06
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l...    48   3e-06
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l...    48   3e-06
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA...    48   3e-06
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b...    47   5e-06

>AT1G05710.5 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1716198-1717023 FORWARD
           LENGTH=149
          Length = 149

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 111/141 (78%), Gaps = 9/141 (6%)

Query: 13  FSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQL 72
           FSR+ G+    M+ +KR+ CS+ +SS      K+ K+DLS SSK+RK+KVGERI ALQQ+
Sbjct: 3   FSRDAGM----MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQI 53

Query: 73  VSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEGIEPCSLRNRGLCLVP 132
           VSPYGKTDT+SVL +AM YI FLH+QVK+LSAPYL++ P    E +E  SLRNRGLCLVP
Sbjct: 54  VSPYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELEQYSLRNRGLCLVP 113

Query: 133 VSITMGVAESNGADIWAPIKT 153
           +  T+GVA+SNGADIWAP+KT
Sbjct: 114 MENTVGVAQSNGADIWAPVKT 134


>AT1G05710.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1716198-1717023 FORWARD
           LENGTH=149
          Length = 149

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 111/141 (78%), Gaps = 9/141 (6%)

Query: 13  FSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQL 72
           FSR+ G+    M+ +KR+ CS+ +SS      K+ K+DLS SSK+RK+KVGERI ALQQ+
Sbjct: 3   FSRDAGM----MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQI 53

Query: 73  VSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEGIEPCSLRNRGLCLVP 132
           VSPYGKTDT+SVL +AM YI FLH+QVK+LSAPYL++ P    E +E  SLRNRGLCLVP
Sbjct: 54  VSPYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELEQYSLRNRGLCLVP 113

Query: 133 VSITMGVAESNGADIWAPIKT 153
           +  T+GVA+SNGADIWAP+KT
Sbjct: 114 MENTVGVAQSNGADIWAPVKT 134


>AT1G05710.4 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1716198-1717023 FORWARD
           LENGTH=149
          Length = 149

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 111/141 (78%), Gaps = 9/141 (6%)

Query: 13  FSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQL 72
           FSR+ G+    M+ +KR+ CS+ +SS      K+ K+DLS SSK+RK+KVGERI ALQQ+
Sbjct: 3   FSRDAGM----MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQI 53

Query: 73  VSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEGIEPCSLRNRGLCLVP 132
           VSPYGKTDT+SVL +AM YI FLH+QVK+LSAPYL++ P    E +E  SLRNRGLCLVP
Sbjct: 54  VSPYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELEQYSLRNRGLCLVP 113

Query: 133 VSITMGVAESNGADIWAPIKT 153
           +  T+GVA+SNGADIWAP+KT
Sbjct: 114 MENTVGVAQSNGADIWAPVKT 134


>AT1G05710.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1716198-1717023 FORWARD
           LENGTH=149
          Length = 149

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 111/141 (78%), Gaps = 9/141 (6%)

Query: 13  FSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQL 72
           FSR+ G+    M+ +KR+ CS+ +SS      K+ K+DLS SSK+RK+KVGERI ALQQ+
Sbjct: 3   FSRDAGM----MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQI 53

Query: 73  VSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEGIEPCSLRNRGLCLVP 132
           VSPYGKTDT+SVL +AM YI FLH+QVK+LSAPYL++ P    E +E  SLRNRGLCLVP
Sbjct: 54  VSPYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELEQYSLRNRGLCLVP 113

Query: 133 VSITMGVAESNGADIWAPIKT 153
           +  T+GVA+SNGADIWAP+KT
Sbjct: 114 MENTVGVAQSNGADIWAPVKT 134


>AT1G05710.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1716198-1717023 FORWARD
           LENGTH=171
          Length = 171

 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/163 (53%), Positives = 111/163 (68%), Gaps = 31/163 (19%)

Query: 13  FSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQL 72
           FSR+ G+    M+ +KR+ CS+ +SS      K+ K+DLS SSK+RK+KVGERI ALQQ+
Sbjct: 3   FSRDAGM----MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQI 53

Query: 73  VSPYGKTDTSSVLNEAMEYIGFLHKQVK----------------------LLSAPYLESS 110
           VSPYGKTDT+SVL +AM YI FLH+QVK                      +LSAPYL++ 
Sbjct: 54  VSPYGKTDTASVLLDAMHYIEFLHEQVKVCSSIPSMIHSSLSEFPCSFVQVLSAPYLQTV 113

Query: 111 PATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAPIKT 153
           P    E +E  SLRNRGLCLVP+  T+GVA+SNGADIWAP+KT
Sbjct: 114 PDATQEELEQYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKT 156


>AT2G31730.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:13487783-13488593 REVERSE
           LENGTH=153
          Length = 153

 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 91/109 (83%)

Query: 45  KKQKADLSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSA 104
           + + +DLS SSK+RK+K+ ERI ALQQLVSPYGKTDT+SVL E M+YI FL +QVK+LSA
Sbjct: 28  RHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTDTASVLLEGMQYIQFLQEQVKVLSA 87

Query: 105 PYLESSPATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAPIKT 153
           PYL+++P+T  E +E  SLR++GLCLVP+  T  VA++NGADIWAP+KT
Sbjct: 88  PYLQATPSTTEEEVEEYSLRSKGLCLVPLEYTSEVAQTNGADIWAPVKT 136


>AT3G19500.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:6759289-6760893 REVERSE
           LENGTH=270
          Length = 270

 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 10/112 (8%)

Query: 55  SKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESS---- 110
           +K RKE++GERI ALQQLVSPYGKTD +SVL+EAM YI FL  Q+++L +PYL +     
Sbjct: 153 AKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLCSPYLINHSLDG 212

Query: 111 ---PATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAPI---KTTSP 156
                 +M  ++   LR+RGLCLVPVS T+ V  SNGAD W+P     TTSP
Sbjct: 213 GVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGADFWSPATMGHTTSP 264


>AT3G20640.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:7210654-7213199 REVERSE
           LENGTH=454
          Length = 454

 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 68/103 (66%), Gaps = 9/103 (8%)

Query: 58  RKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYL---------E 108
           RKEK+G+RI ALQQLVSP+GKTD +SVL+EA+EYI FLH+QV  LS PY+         +
Sbjct: 346 RKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQ 405

Query: 109 SSPATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAPI 151
           S  +T +E  E   LR+RGLCLVPVS T  V      D W P 
Sbjct: 406 SDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPT 448


>AT2G20100.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:8678185-8681809 FORWARD
           LENGTH=362
          Length = 362

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 86/175 (49%), Gaps = 45/175 (25%)

Query: 26  GHKRSPCSVDQSSYTSIASKKQKADLSMSS---KDRKEKVGERIVALQQLVSPYGKTDTS 82
           G   S C+  +   +S A+KK K  +  S    K RKEK+G RI +L QLVSP+GKTDT+
Sbjct: 186 GLNLSECNSSEMIGSSFANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTA 245

Query: 83  SVLNEAMEYIGFLHKQVKLLSAPY---------LESSPATMMEGIEP----------C-- 121
           SVL+EA+ YI FLH Q++ LS PY         +       M GI P          C  
Sbjct: 246 SVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCMK 305

Query: 122 ---------------------SLRNRGLCLVPVSITMGVAESNGADIWAPIKTTS 155
                                 LR+RGLCLVP+S T+ V   NGAD WAP   T+
Sbjct: 306 RGVSLSSTDNQKSNPNEEPMKDLRSRGLCLVPISCTLQVGSDNGADYWAPAFGTT 360


>AT1G61660.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:22754003-22756171 REVERSE
           LENGTH=393
          Length = 393

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 65/106 (61%), Gaps = 11/106 (10%)

Query: 56  KDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLE------- 108
           K RKE + ++I +LQQLVSP+GKTDT+SVL EA+EYI FLH QV +LS PY++       
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 109 ----SSPATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAP 150
               S  +   +  E   LR  GLCLVP+S T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385


>AT1G61660.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:22754366-22756171 REVERSE
           LENGTH=390
          Length = 390

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 65/106 (61%), Gaps = 11/106 (10%)

Query: 56  KDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLE------- 108
           K RKE + ++I +LQQLVSP+GKTDT+SVL EA+EYI FLH QV +LS PY++       
Sbjct: 277 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 336

Query: 109 ----SSPATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAP 150
               S  +   +  E   LR  GLCLVP+S T  VA    AD W P
Sbjct: 337 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 382


>AT4G29100.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:14341140-14344575 FORWARD
           LENGTH=407
          Length = 407

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 70/137 (51%), Gaps = 42/137 (30%)

Query: 56  KDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMM 115
           K RKEK+G RI AL QLVSP+GKTDT+SVL+EA+ YI FL  Q++ LS PY  ++ +  M
Sbjct: 263 KVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNM 322

Query: 116 ------EGIEPC------------------------------------SLRNRGLCLVPV 133
                 +G   C                                     LR+RGLCLVP+
Sbjct: 323 RHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPI 382

Query: 134 SITMGVAESNGADIWAP 150
           S T+ V   NGAD WAP
Sbjct: 383 SCTLQVGSDNGADYWAP 399


>AT1G49830.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:18445111-18446659 REVERSE
           LENGTH=250
          Length = 250

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 6/90 (6%)

Query: 66  IVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEG--IEPC-- 121
           I  LQ LVSPYGKTD +SVL+E M YI FL  QV++LS PY + +P    +   + P   
Sbjct: 134 ITTLQHLVSPYGKTDAASVLHETMGYIKFLQDQVQVLSTPYFKHNPLDDEDTGEVNPTMK 193

Query: 122 --SLRNRGLCLVPVSITMGVAESNGADIWA 149
              LR+ GLCLVP++ T+ VA +NGAD+W+
Sbjct: 194 VKELRSNGLCLVPLAWTVHVANTNGADLWS 223


>AT1G31050.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:11075720-11079140 REVERSE
           LENGTH=434
          Length = 434

 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 12/105 (11%)

Query: 59  KEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESS----PATM 114
           K K+ ++I  LQQ+VSP+GKTDT+SVL EA+ YI F  +QVKLLS PY+++S    P   
Sbjct: 323 KAKLRDKITTLQQIVSPFGKTDTASVLQEAITYINFYQEQVKLLSTPYMKNSSMKDPWGG 382

Query: 115 ME-------GIEPCSLRNRGLCLVPVSIT-MGVAESNGADIWAPI 151
            +       G +   LR+RGLCLVP+S T +   +++  D W P 
Sbjct: 383 WDREDHNKRGPKHLDLRSRGLCLVPISYTPIAYRDNSATDYWNPT 427


>AT1G27660.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:9621701-9625666 FORWARD
           LENGTH=453
          Length = 453

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 12/91 (13%)

Query: 56  KDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESS---PA 112
           K RKEK+G+RI ALQQLVSP+GKTDT+SVL EA+ YI FL  Q++ LS PY+ +S   P 
Sbjct: 332 KVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPG 391

Query: 113 TMMEGI---------EPCSLRNRGLCLVPVS 134
              + +         E   LR+RGLCLVP+S
Sbjct: 392 KASQLVSQSQEGDEEETRDLRSRGLCLVPLS 422


>AT4G21340.1 | Symbols: B70 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:11353064-11354628
           FORWARD LENGTH=301
          Length = 301

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 16/102 (15%)

Query: 54  SSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQV--KLLSAPYL---- 107
           S K RKEK+G+RI ALQQLVSP+GKTDT+SVL++A++YI FL +Q+  K+ ++P+L    
Sbjct: 188 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSPHLNSIG 247

Query: 108 ---------ESSPATMMEGIEP-CSLRNRGLCLVPVSITMGV 139
                    +SS  T  +   P   LR+RGLCL+P+S T   
Sbjct: 248 SGEQKQWSDKSSNNTHNQNCSPRQDLRSRGLCLMPISSTFST 289


>AT4G05170.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:2667990-2669187 REVERSE
           LENGTH=238
          Length = 238

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 20/100 (20%)

Query: 54  SSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPAT 113
           S K RKEK+G+RI ALQQLVSP+GKTDT+SVLNEA+EYI FL +QV +LS P   +  + 
Sbjct: 111 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNPEQNTIGSV 170

Query: 114 MMEGI--------------EPCS------LRNRGLCLVPV 133
             +                + CS      L +RGLCL+P+
Sbjct: 171 QQQQCSNKKSINTQGEVEEDECSPRRYVDLSSRGLCLMPI 210


>AT2G20100.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:8678185-8680916 FORWARD
           LENGTH=317
          Length = 317

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 26  GHKRSPCSVDQSSYTSIASKKQKADLSMSS---KDRKEKVGERIVALQQLVSPYGKTDTS 82
           G   S C+  +   +S A+KK K  +  S    K RKEK+G RI +L QLVSP+GKTDT+
Sbjct: 186 GLNLSECNSSEMIGSSFANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTA 245

Query: 83  SVLNEAMEYIGFLHKQVKLLSAPYL 107
           SVL+EA+ YI FLH Q++ LS PY 
Sbjct: 246 SVLSEAIGYIRFLHSQIEALSLPYF 270


>AT1G61660.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:22754603-22756171 REVERSE
           LENGTH=347
          Length = 347

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 44/53 (83%)

Query: 56  KDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLE 108
           K RKE + ++I +LQQLVSP+GKTDT+SVL EA+EYI FLH QV +LS PY++
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMK 332


>AT1G61660.4 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:22754366-22756171 REVERSE
           LENGTH=371
          Length = 371

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 75  PYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLE-----------SSPATMMEGIEPCSL 123
           P  KTDT+SVL EA+EYI FLH QV +LS PY++           S  +   +  E   L
Sbjct: 277 PTFKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHEL 336

Query: 124 RNRGLCLVPVSITMGVAESNGADIWAP 150
           R  GLCLVP+S T  VA    AD W P
Sbjct: 337 RGHGLCLVPISSTFPVANETTADFWTP 363


>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
           chr4:15079489-15081606 REVERSE LENGTH=310
          Length = 310

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 34/132 (25%)

Query: 43  ASKKQKAD-LSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKL 101
           A + Q  D  S++ + R+E++ ER+ +LQ+LV    KTD +S+L+E ++Y+ FL  QVK+
Sbjct: 132 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 191

Query: 102 LS------------------------------APYLESSPATMME---GIEPCSLRNRGL 128
           LS                              A   E   A +ME   G     L+ +GL
Sbjct: 192 LSMSRLGGAASASSQISEDAGGSHENTSSSGEAKMTEHQVAKLMEEDMGSAMQYLQGKGL 251

Query: 129 CLVPVSITMGVA 140
           CL+P+S+   ++
Sbjct: 252 CLMPISLATTIS 263


>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
           chr2:10319646-10322177 REVERSE LENGTH=350
          Length = 350

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 38  SYTSIASKKQKAD--LSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFL 95
           S T I +++ +A    S++ + R+E++ ER+ ALQ+LV    KTD +S+L+E ++Y+ FL
Sbjct: 134 SRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFL 193

Query: 96  HKQVKLLS 103
             QVK+LS
Sbjct: 194 QLQVKVLS 201


>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
           chr5:23483670-23484889 REVERSE LENGTH=297
          Length = 297

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 43  ASKKQKAD-LSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKL 101
           A + Q  D  S++ + R+E++ ER+ +LQ+LV    KTD +S+L+E +EY+ FL  QVK+
Sbjct: 101 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKV 160

Query: 102 LS 103
           LS
Sbjct: 161 LS 162


>AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:6321840-6323312 REVERSE
           LENGTH=328
          Length = 328

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 10/99 (10%)

Query: 9   ADSVFSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVA 68
            D+  S+E+G D + +  + ++  S         A+  Q    S+ ++ R+E++ ER+  
Sbjct: 216 GDTFLSKEDGEDSKALNLNGKTRAS------RGAATDPQ----SLYARKRRERINERLRI 265

Query: 69  LQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYL 107
           LQ LV    K D S++L EA++Y+ FL  Q+KLLS+  L
Sbjct: 266 LQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDL 304


>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
           chr1:9654753-9655806 FORWARD LENGTH=258
          Length = 258

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 52  SMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYL 107
           S+ ++ R+EK+ ER+  LQ LV    K D S++L EA+ Y+ FL  Q+KLLS+  L
Sbjct: 179 SLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDL 234


>AT2G14760.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:6321840-6323312 REVERSE
           LENGTH=341
          Length = 341

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 9   ADSVFSREEGIDVR--KMIGHKRSP--CSVDQSSYTSIASKKQKADLSMSSKDRKEKVGE 64
            D+  S+E+G D +   + G  R+    + D  S  +   +  K    M  K R+E++ E
Sbjct: 216 GDTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARLKQLNKVHCMMVQK-RRERINE 274

Query: 65  RIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYL 107
           R+  LQ LV    K D S++L EA++Y+ FL  Q+KLLS+  L
Sbjct: 275 RLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDL 317


>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
           chr4:16239566-16241052 REVERSE LENGTH=352
          Length = 352

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 52  SMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYL 107
           S+ ++ R+E++ ER+  LQ LV    K D S++L EA+ Y+ FL  Q+KLLS+  L
Sbjct: 278 SLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDL 333


>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
           factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
          Length = 524

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 14/99 (14%)

Query: 7   CNADSVFSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKAD--LSMSSKDRKEKVGE 64
           C+++ V   EE  D RK  G  R          T + SK+ ++    ++S + R++++ E
Sbjct: 314 CHSEDV--EEESGDGRKEAGPSR----------TGLGSKRSRSAEVHNLSERRRRDRINE 361

Query: 65  RIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLS 103
           ++ ALQ+L+    K D +S+L+EA+EY+  L  QV+++S
Sbjct: 362 KMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMS 400


>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
           factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
          Length = 524

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 14/99 (14%)

Query: 7   CNADSVFSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKAD--LSMSSKDRKEKVGE 64
           C+++ V   EE  D RK  G  R          T + SK+ ++    ++S + R++++ E
Sbjct: 314 CHSEDV--EEESGDGRKEAGPSR----------TGLGSKRSRSAEVHNLSERRRRDRINE 361

Query: 65  RIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLS 103
           ++ ALQ+L+    K D +S+L+EA+EY+  L  QV+++S
Sbjct: 362 KMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMS 400


>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
           chr5:15036197-15037574 FORWARD LENGTH=307
          Length = 307

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 43  ASKKQKADLSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLL 102
           A+   K   S+++K+R+E++ ER+  LQ+LV    K D  ++L +A+ Y+ FL  QVK+L
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 263

Query: 103 SA 104
           +A
Sbjct: 264 AA 265


>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
           3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
          Length = 407

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 36  QSSYTSIASKKQKAD--LSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIG 93
           Q+  ++ ++K+ +A    ++S + R++++ ER+ ALQ+L+    K+D +S+L+EA+EY+ 
Sbjct: 201 QARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMK 260

Query: 94  FLHKQVKLLS 103
            L  Q++++S
Sbjct: 261 SLQLQIQMMS 270


>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17414167-17415945
           FORWARD LENGTH=373
          Length = 373

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 10/85 (11%)

Query: 52  SMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSP 111
           ++S K R+ ++ E++ ALQ L+    KTD +S+L+EA+EY+  L  QV++L         
Sbjct: 203 NLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML--------- 253

Query: 112 ATMMEGIEPCSLRNRGLCLVPVSIT 136
            TM  GI    L   G  L P+ ++
Sbjct: 254 -TMRNGINLHPLCLPGTTLHPLQLS 277


>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
           5 | chr2:8704276-8706538 REVERSE LENGTH=478
          Length = 478

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 36  QSSYTSIASKKQKAD--LSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIG 93
           Q+  ++ ++K+ +A    ++S + R++++ ER+ ALQ+L+    K+D +S+L+EA+EY+ 
Sbjct: 272 QARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMK 331

Query: 94  FLHKQVKLLS 103
            L  Q++++S
Sbjct: 332 SLQLQIQMMS 341


>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
           5 | chr2:8704525-8706538 REVERSE LENGTH=478
          Length = 478

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 36  QSSYTSIASKKQKAD--LSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIG 93
           Q+  ++ ++K+ +A    ++S + R++++ ER+ ALQ+L+    K+D +S+L+EA+EY+ 
Sbjct: 272 QARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMK 331

Query: 94  FLHKQVKLLS 103
            L  Q++++S
Sbjct: 332 SLQLQIQMMS 341


>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17863-19848
           FORWARD LENGTH=399
          Length = 399

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 11  SVFSREEGIDVRKMIGHKRSPCSVDQ-----SSYTSIASKKQKADL--SMSSKDRKEKVG 63
           S+ S +  ID    + H R P   D+        +S+++K+ +A    + S + R++K+ 
Sbjct: 172 SMGSHDNTIDDHDSVCHSR-PQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKIN 230

Query: 64  ERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLS 103
           +R+  LQ+LV    KTD +S+L+E +EY+  L  QV ++S
Sbjct: 231 QRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMMS 270


>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:26785332-26786338
           REVERSE LENGTH=210
          Length = 210

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query: 52  SMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLS 103
           ++S K R+ K+ E++ ALQ+L+    KTD +S+L+EA+EY+  L  QV+ L+
Sbjct: 99  NLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTLA 150