Miyakogusa Predicted Gene

Lj4g3v0506970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0506970.1 Non Characterized Hit- tr|C1EDS6|C1EDS6_MICSR
Putative uncharacterized protein OS=Micromonas sp.
(st,33.33,8e-17,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Protein of
unknown function DUF1301, TMEM70; seg,NULL; DUF,CUFF.47526.1
         (251 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g033405.1 | transmembrane protein, putative | HC | chr6:10...   337   5e-93

>Medtr6g033405.1 | transmembrane protein, putative | HC |
           chr6:10757205-10758093 | 20130731
          Length = 237

 Score =  337 bits (865), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 165/226 (73%), Positives = 180/226 (79%), Gaps = 1/226 (0%)

Query: 26  YNCFRSSTCGRPVSTNPTFKTTINTNPTSKTSSQLAVAQIRWASQATTREEDNKISIGPA 85
           Y CFRSSTCGRP++TNPT K   N  P  K SSQ A +QIRW S+ TT EED KISIGPA
Sbjct: 13  YQCFRSSTCGRPITTNPTIKPWNNATPAYKPSSQFAASQIRWTSKGTTTEED-KISIGPA 71

Query: 86  GGGQSGEDDKETGVVYNGPISSTIXXXXXXXXXXXXXXXXXGPVITFMTSPDMNVILKGA 145
            G +S E DK+TGV Y GPISSTI                 GPVITFMTSPD NVILKGA
Sbjct: 72  SGVKSEEGDKDTGVYYFGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDSNVILKGA 131

Query: 146 VASTVIFLSASTTGALHWFVSPYIHKLRWLPGSDTFEVEMLSWLATPIPKTLKFSDIRPA 205
           VAS+VIF SASTT  LHWFVSPY+HKLRW PGSD+FEVEMLSWLAT IPKT+KFSDIRPA
Sbjct: 132 VASSVIFFSASTTAILHWFVSPYVHKLRWEPGSDSFEVEMLSWLATYIPKTIKFSDIRPA 191

Query: 206 ETNRPFVTFKADGSFYFVDTEHCHNKALLARLTPQKVTHESAFKNL 251
           +TNRP+VTFKA+G+FYFVDTEHCHNKALLARLTPQK TH+SAFKNL
Sbjct: 192 DTNRPYVTFKANGNFYFVDTEHCHNKALLARLTPQKETHDSAFKNL 237