Miyakogusa Predicted Gene

Lj4g3v0506970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0506970.1 Non Chatacterized Hit- tr|C1EDS6|C1EDS6_MICSR
Putative uncharacterized protein OS=Micromonas sp.
(st,33.33,8e-17,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Protein of
unknown function DUF1301, TMEM70; seg,NULL; DUF,CUFF.47526.1
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35790.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   249   8e-67

>AT2G35790.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF1301
           (InterPro:IPR009724); Has 116 Blast hits to 116 proteins
           in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53;
           Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes -
           8 (source: NCBI BLink). | chr2:15040735-15041976 FORWARD
           LENGTH=238
          Length = 238

 Score =  249 bits (637), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 146/254 (57%), Positives = 174/254 (68%), Gaps = 19/254 (7%)

Query: 1   MARAALLHLLRSQNKHLVSTRTPSAYNCFRSSTCGRPVSTNPTFKTTINTNPTSKTSSQL 60
           M R+AL+HLLRSQ++ L S+   S Y+  RS       S NP  +  + +          
Sbjct: 1   MGRSALIHLLRSQSRRLSSSTFTSGYH-HRSIAGSWSSSVNPKVRFQVPS---------- 49

Query: 61  AVAQIRWAS-QATTREEDN--KISIGPAGGGQSGEDDKETGVVYNGPISSTIXXXXXXXX 117
            ++Q  WAS  A TRE+D+  KISIGP    Q  +++K+ GVVY GPISSTI        
Sbjct: 50  -LSQRSWASFGAKTREDDDEHKISIGP----QEKKEEKDGGVVYYGPISSTIKKVKLLSL 104

Query: 118 XXXXXXXXXGPVITFMTSPDMNVILKGAVASTVIFLSASTTGALHWFVSPYIHKLRWLPG 177
                    GPVITFMTSP +NVI+KGAVASTVIFLSASTT ALHWFVSPY+HKLRW PG
Sbjct: 105 STCCLSVSLGPVITFMTSPGLNVIMKGAVASTVIFLSASTTAALHWFVSPYVHKLRWQPG 164

Query: 178 SDTFEVEMLSWLATPIPKTLKFSDIRPAETNRPFVTFKADGSFYFVDTEHCHNKALLARL 237
           SDTFEVEM++WL T   KTLKFSDIR  +T RP+V+FKADG+FYFVD +HC NKALLARL
Sbjct: 165 SDTFEVEMMTWLGTFSAKTLKFSDIRYPDTQRPYVSFKADGNFYFVDADHCPNKALLARL 224

Query: 238 TPQKVTHESAFKNL 251
           TP K  H+SAFKNL
Sbjct: 225 TPPKDAHDSAFKNL 238