Miyakogusa Predicted Gene

Lj4g3v0072450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0072450.1 tr|A9RGR4|A9RGR4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_174728,43.75,3e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL;
VACUOLAR SORTING PROTEIN
53,NULL,NODE_36394_length_799_cov_59.660828.path1.1
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g02140.1                                                       177   2e-45
Glyma15g13040.1                                                       169   6e-43

>Glyma09g02140.1 
          Length = 820

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 95/137 (69%), Gaps = 1/137 (0%)

Query: 1   MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 60
           MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP
Sbjct: 684 MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 743

Query: 61  GIKQTQXX-XXXXXXXXXXXXXXXXXXXXXXXXREDVXXXXXXXXXXXXXXXFKRFLALT 119
           GIKQTQ                           REDV               FKRFLALT
Sbjct: 744 GIKQTQIAPSIVPAAAPVAPVVPSPSAIGLIASREDVLTRAAALGRGAATTGFKRFLALT 803

Query: 120 EAAKDRKDGPFRKLFNP 136
           EAAKDRKDGPFRKLFNP
Sbjct: 804 EAAKDRKDGPFRKLFNP 820


>Glyma15g13040.1 
          Length = 820

 Score =  169 bits (429), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 92/137 (67%), Gaps = 1/137 (0%)

Query: 1   MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 60
           MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP
Sbjct: 684 MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 743

Query: 61  GIKQTQXX-XXXXXXXXXXXXXXXXXXXXXXXXREDVXXXXXXXXXXXXXXXFKRFLALT 119
            IKQTQ                           REDV               FKRFLALT
Sbjct: 744 EIKQTQIAPSIVPAAPPVAPVVPSPSAIGLIASREDVLTRAAALGRGAATTGFKRFLALT 803

Query: 120 EAAKDRKDGPFRKLFNP 136
           EAAKDRK GPFR LFNP
Sbjct: 804 EAAKDRKAGPFRNLFNP 820