Miyakogusa Predicted Gene

Lj4g3v0072450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0072450.1 tr|A9RGR4|A9RGR4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_174728,43.75,3e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL;
VACUOLAR SORTING PROTEIN
53,NULL,NODE_36394_length_799_cov_59.660828.path1.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g028270.1 | vacuolar sorting-associated-like protein | HC ...   183   5e-47
Medtr2g028270.2 | vacuolar sorting-associated-like protein | HC ...    85   2e-17

>Medtr2g028270.1 | vacuolar sorting-associated-like protein | HC |
           chr2:10426065-10439315 | 20130731
          Length = 819

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 95/136 (69%)

Query: 1   MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 60
           MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP
Sbjct: 684 MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 743

Query: 61  GIKQTQXXXXXXXXXXXXXXXXXXXXXXXXXXREDVXXXXXXXXXXXXXXXFKRFLALTE 120
           GIKQTQ                          REDV               FKRFLALTE
Sbjct: 744 GIKQTQITPAIAPAPPVAPVVPSPTAVGLVASREDVLTRAAALGRGAATTGFKRFLALTE 803

Query: 121 AAKDRKDGPFRKLFNP 136
           AAKDRKDGPFRKLFNP
Sbjct: 804 AAKDRKDGPFRKLFNP 819


>Medtr2g028270.2 | vacuolar sorting-associated-like protein | HC |
           chr2:10426065-10439315 | 20130731
          Length = 773

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1   MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELK 41
           MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELK
Sbjct: 684 MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELK 724