Miyakogusa Predicted Gene

Lj4g3v0072450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0072450.1 tr|A9RGR4|A9RGR4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_174728,43.75,3e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL;
VACUOLAR SORTING PROTEIN
53,NULL,NODE_36394_length_799_cov_59.660828.path1.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family ...   154   2e-38
AT1G50500.1 | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficki...   154   2e-38
AT1G50970.1 | Symbols:  | Membrane trafficking VPS53 family prot...   106   4e-24

>AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family
           protein | chr1:18708217-18715597 REVERSE LENGTH=847
          Length = 847

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 87/140 (62%), Gaps = 5/140 (3%)

Query: 1   MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 60
           MS+AEALLKVILSP+DSVADTYRAL PEGTPMEFQRILELKGLKKADQQSILDDFNKHGP
Sbjct: 707 MSRAEALLKVILSPIDSVADTYRALFPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 766

Query: 61  GIKQTQXXXXXXXXXXXXXXXXXXXXXXXXXX-----REDVXXXXXXXXXXXXXXXFKRF 115
           G  Q                                  EDV               FK+F
Sbjct: 767 GFTQQSVAAAMPQPMPTPPAPPLAITNPATAAGFIANSEDVLTRAAALGRGAASTGFKKF 826

Query: 116 LALTEAAKDRKDGPFRKLFN 135
           +ALTEAAKDRKDGP R+LFN
Sbjct: 827 IALTEAAKDRKDGPLRRLFN 846


>AT1G50500.1 | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficking
           VPS53 family protein | chr1:18708217-18715597 REVERSE
           LENGTH=828
          Length = 828

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 87/140 (62%), Gaps = 5/140 (3%)

Query: 1   MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 60
           MS+AEALLKVILSP+DSVADTYRAL PEGTPMEFQRILELKGLKKADQQSILDDFNKHGP
Sbjct: 688 MSRAEALLKVILSPIDSVADTYRALFPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 747

Query: 61  GIKQTQXXXXXXXXXXXXXXXXXXXXXXXXXX-----REDVXXXXXXXXXXXXXXXFKRF 115
           G  Q                                  EDV               FK+F
Sbjct: 748 GFTQQSVAAAMPQPMPTPPAPPLAITNPATAAGFIANSEDVLTRAAALGRGAASTGFKKF 807

Query: 116 LALTEAAKDRKDGPFRKLFN 135
           +ALTEAAKDRKDGP R+LFN
Sbjct: 808 IALTEAAKDRKDGPLRRLFN 827


>AT1G50970.1 | Symbols:  | Membrane trafficking VPS53 family protein
           | chr1:18896323-18900268 FORWARD LENGTH=569
          Length = 569

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 1   MSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQSILDDFNKHGP 60
           M +AEA+LKVI SP+ +V DTYRAL PE TPMEFQRIL LKGL KA+QQSILDDFN H  
Sbjct: 440 MKRAEAVLKVIASPIVTVIDTYRALFPEETPMEFQRILVLKGLTKAEQQSILDDFNNHSS 499

Query: 61  GIKQTQXXXXX-XXXXXXXXXXXXXXXXXXXXXREDVXXXXXXXXXXXXXXXFKRFLALT 119
            I Q                              E+V               F +  ALT
Sbjct: 500 RITQLSVAAKTPEAHALPLALTNVAPAVRFKANSEEV----LTRAASAATTSFMKLYALT 555

Query: 120 EAAKDRKDGPFRKLFNP 136
            AAKDR   PFRKLFNP
Sbjct: 556 GAAKDR---PFRKLFNP 569