Miyakogusa Predicted Gene

Lj4g3v0071100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0071100.1 Non Chatacterized Hit- tr|I1L360|I1L360_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,83.64,5e-18,SCO1-SenC,Copper chaperone SCO1/SenC;
Thioredoxin-like,Thioredoxin-like fold; no
description,Thiored,gene.g51457.t1.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC famil...    71   3e-13
AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein | chr4...    48   2e-06

>AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC family
           protein | chr3:2727285-2729289 FORWARD LENGTH=334
          Length = 334

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 89  DIHNASKAVKHGPYVGKTAIGGPFHLTNHHGKHLTENDFLGKWTVMYFGFT 139
           DI+  S AVK GP  GK AIGGPF L    GK +TE + +GKWT++YFGFT
Sbjct: 154 DINKNSIAVKEGPSAGKAAIGGPFSLIRDDGKRVTEKNLMGKWTILYFGFT 204


>AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein |
           chr4:18435586-18437095 REVERSE LENGTH=276
          Length = 276

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 108 IGGPFHLTNHHGKHLTENDFLGKWTVMYFGFT 139
           IGGPF L +   K +TENDF GKW ++YFG++
Sbjct: 115 IGGPFTLVSTENKIVTENDFCGKWVLLYFGYS 146