Miyakogusa Predicted Gene

Lj3g3v3678780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3678780.1 Non Characterized Hit- tr|I1L5L1|I1L5L1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25240
PE,81.56,0,RIBOSOMAL_L1,Ribosomal protein L1, conserved site;
rplA_bact: ribosomal protein L1,Ribosomal protein,CUFF.46287.1
         (331 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0059s0060.1 | 50S ribosomal protein L1p | HC | scaffold0059...   479   e-135
Medtr4g080120.1 | 50S ribosomal protein L1p | HC | chr4:31058644...   149   3e-36

>Medtr0059s0060.1 | 50S ribosomal protein L1p | HC |
           scaffold0059:27467-21829 | 20130731
          Length = 359

 Score =  479 bits (1234), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/250 (93%), Positives = 240/250 (96%)

Query: 82  KPKTGKAALLLKRDRTRSKRFLEIQKLRERKKEYDLKTAISLVKETAKTKFVETVEAHFR 141
           KPK GKAALLLK DR RSKRFLEIQKLRE KKEYDLKTAISLVKETAKTKFVETVEAHFR
Sbjct: 110 KPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTKFVETVEAHFR 169

Query: 142 LNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGG 201
           LNIDPKYNDQQLRATVSLPKGTGKPIK+AVLTQGE+FDEAK AGADLVGGEDLIEQIKGG
Sbjct: 170 LNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEQIKGG 229

Query: 202 FMEFDKLIASPDMMPKVAILGKILGPRGLMPNPKAGTVTANIPQAISEFKQGKVEYRADK 261
           +MEFDKLIASPDMMPKVA LGKILGPRGLMPNPKAGTVTANI QAI+EFKQGKVEYRADK
Sbjct: 230 YMEFDKLIASPDMMPKVATLGKILGPRGLMPNPKAGTVTANITQAIAEFKQGKVEYRADK 289

Query: 262 TGIVHLPFGKADFPEEDLLVNLLAAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIR 321
           TGIVHLPFGKADF EEDLL NLL+AIKSVE NKPSGAKGVYWKSAHICSAMGPSVRLNI+
Sbjct: 290 TGIVHLPFGKADFSEEDLLTNLLSAIKSVETNKPSGAKGVYWKSAHICSAMGPSVRLNIK 349

Query: 322 DMLDYRLQSE 331
           +MLDYRLQSE
Sbjct: 350 EMLDYRLQSE 359


>Medtr4g080120.1 | 50S ribosomal protein L1p | HC |
           chr4:31058644-31065034 | 20130731
          Length = 407

 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 7/224 (3%)

Query: 107 KLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKP 166
           K +E+   +DL  AI  VK  AK KF ETVEAH RL ID K  +  +R TV LP G  K 
Sbjct: 171 KQKEKPPLFDLSEAIRQVKANAKAKFDETVEAHVRLGIDSKRTELAVRGTVILPHGAPKA 230

Query: 167 IKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF--MEFDKLIASPDMMPKVAILGKI 224
           + VAV  +G   +EAK AGAD+VGG++LIE+I  G   ++ DK  ++P M P +  + + 
Sbjct: 231 VTVAVFAEGAEAEEAKAAGADIVGGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQY 290

Query: 225 LGPRGLMPNPKAGTVTANIPQAISEFKQGKVEYRADKTGIVHLPFGKADFPEEDLLVNLL 284
           L  R LMP+ K GT+T++I   + E +QG++E++ +   I+H+  GK  + EE+L  N+ 
Sbjct: 291 LRKRRLMPDKKLGTLTSDIAGQLKELRQGRIEFKMESKSILHVGVGKVSYKEENLRENIG 350

Query: 285 AAIKSVEANKPSGAKGV-----YWKSAHICSAMGPSVRLNIRDM 323
           A + +V   KP+G K       Y  S HICS +GP + ++I+ +
Sbjct: 351 AFMNAVLQAKPAGLKKTSKYAGYVLSVHICSTIGPGIPVSIQSL 394