Miyakogusa Predicted Gene
- Lj3g3v3639130.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3639130.1 tr|Q53MN0|Q53MN0_ORYSJ PHD-finger family protein,
expressed OS=Oryza sativa subsp. japonica GN=LOC_O,50,2e-17,seg,NULL;
no description,Zinc finger, RING/FYVE/PHD-type; BROMODOMAIN CONTAINING
PROTEIN,NULL; FALZ-,CUFF.46051.1
(965 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02890.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 365 e-101
AT5G16680.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 221 1e-57
AT1G43770.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 110 7e-24
AT4G17850.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 73 1e-12
AT5G61100.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 63 1e-09
AT1G43770.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 57 7e-08
AT5G61110.1 | Symbols: | zinc ion binding | chr5:24581078-24581... 50 1e-05
>AT3G02890.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr3:640828-645303 FORWARD LENGTH=994
Length = 994
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/714 (35%), Positives = 365/714 (51%), Gaps = 141/714 (19%)
Query: 269 IVEHDVKVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHAEGS 328
++E DVKVCD CGD+GREDLLAIC RCSDGAEHTYCMR ML+KVP+G WLCEECK AE +
Sbjct: 207 MLELDVKVCDTCGDAGREDLLAICSRCSDGAEHTYCMRVMLKKVPKGYWLCEECKFAEKA 266
Query: 329 ANLRLDAEVNKNRKVSSSSQISGKRPSESVEVAIAAKRQALESSTGSPKASNPKKTVSLS 388
+L+ + + +V+ ++QIS KR + E +KR A+ + GSPK S + +LS
Sbjct: 267 EKHKLETKRKRESEVNVNTQISSKRHIDKFEAVPDSKRLAVGAQIGSPKRSVLPRMSTLS 326
Query: 389 RESSFKSLDNGKVKPGQQIPIR---NHHGGDDIALARSLSTGPRSQAARSTLLKXXXXXX 445
RE+SFK L+ KP +++ N H DD R ST + Q+ + + LK
Sbjct: 327 RETSFKGLE----KPTRKLAHYSSFNSHSSDDTESTR--STDSQLQSPKGSFLKSNSFNS 380
Query: 446 XXXKPRAKLIDEVVPQKQKGGGQYISKNMDTPAGLMSKSMSFKSSNLGRATDSKVKMLSS 505
+ + + +D+ + +QK G + S ++ G S N+G++ S+ + S
Sbjct: 381 LSSRSKVRPVDDDMLPRQKTGNENSS--LEVKEGF--------SKNVGKSMSSRCIDVGS 430
Query: 506 KPGTAQDLKGSRHGKESGVFDRKTLSRIDRPVVSASKGDQKLTPRGETAKPSAVNHNREF 565
+KGS+ K+ S P S S RG ++ P A +
Sbjct: 431 SNCNDSKVKGSKQLKD--------WSTEANPSASIS--------RGNSSIPYAKSPRDLK 474
Query: 566 KVNQDGKLNSLSK--------------------SMNNIGHKSRELQERTSTSGHETQQNG 605
+ DGK SLSK S N S ++ Q +G
Sbjct: 475 DLQSDGKQGSLSKQARHLSRNRLEDIVASVGDSSKNEKCSSSEQISSEAKCKDELAQVDG 534
Query: 606 LPRSRDTANQIDKTKDGCSDRVRSSLTNTSECCTIGGTQELGDEVSVNATSSSKEEMHNG 665
+PRSR+ +KTKD + + ++ E+ + G
Sbjct: 535 VPRSREFREAGEKTKDAVGNHQKRNIG---------------------------EDNNKG 567
Query: 666 NSLKAAIHAALLRRPEIHKKK-----DVP------------------------ERTADFR 696
N L+AA+ AAL ++P K + D+P + F+
Sbjct: 568 NRLRAAVDAALRKKPSFSKNRGLEQSDLPPVSNVDSGCNKALKCLSSKVPVIRDWPVGFQ 627
Query: 697 SQP---------RKSDSV--------------GSASGKPVVKD----LLNRALEIS--NV 727
P +++++V S S +P V D + R L ++ NV
Sbjct: 628 GLPGGHPNLRTDKQTNTVNEKQFTLAGTDATTASQSVEPEVNDPSVQSVMRDLPVAAPNV 687
Query: 728 ISKTSAIPEYKYIWQGVFEVHRSGKPPDLYTGIQAHLSSCASPKVLDVVNKFLPEVSLHE 787
+S TSAIP+ +YIWQG EV +S +++GIQA+LS+ ASPKV++VV +F +V+L+E
Sbjct: 688 LSTTSAIPKPEYIWQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVVKQFPEKVTLNE 747
Query: 788 VSRLSTWPSQFHQGGGAKEDNIALYFFAKDIESYERYYKSLLDHMIKNDLALKGTFDGVE 847
V RLS+WP+QF Q GAKE ++AL+FFAKDIESYE+ YK L+D+MI+ DLALKG +GVE
Sbjct: 748 VPRLSSWPAQF-QDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALKGNLEGVE 806
Query: 848 LLIFTSNQLPENSQRWNTLFFLWGIFRGRRINHSDSAKKICIPSLNVIPNEKCF 901
LLIF SNQLP++ QRWN LFFLWG+FRG++ + S+ K +P+ V PN F
Sbjct: 807 LLIFASNQLPQDCQRWNMLFFLWGVFRGKKESCSNPPKNTPLPASCVSPNRDTF 860
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 34/145 (23%)
Query: 1 MRLEPGTCKVCSAPCSTCIHLNRVAMGSKAEEYSDENCRVGEANQYXXXXXXXXXXXXRA 60
+ ++ GTC VCSAPCS+C+H N GSK++E SDEN A+Q
Sbjct: 17 LEIQSGTCNVCSAPCSSCMHHNAEFSGSKSDESSDENSHGVLASQCSFNGD--------- 67
Query: 61 CNRLK----DAVTKTSNTPSD-----HSSHDFLSENAESK-----------PTLSEKYQD 100
N L+ +A + NT S+ +S+HD SENAESK P L ++D
Sbjct: 68 -NLLRSSGVNAPGSSHNTSSEASHLVNSNHDTSSENAESKEIIRSSDISHGPLLDRPHKD 126
Query: 101 SKCLEGLDDSISCNNRASKANLVSG 125
++ +D SCN+ +++ L G
Sbjct: 127 QDSMK-VD---SCNDHQARSTLGQG 147
>AT5G16680.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:5467534-5472956 REVERSE LENGTH=1311
Length = 1311
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/189 (55%), Positives = 139/189 (73%), Gaps = 6/189 (3%)
Query: 711 KPVVKDLLNRALEISNVISKTSAIPEYKYIWQGVFEVHRSGKPPDLYTGIQAHLSSCASP 770
KPV++DL L S V+ ++SAIP++++IWQG EV + +++GIQAHLS+ ASP
Sbjct: 811 KPVMRDL---PLVPSPVMLRSSAIPDHEFIWQGDLEVRKIINQSAMHSGIQAHLSTLASP 867
Query: 771 KVLDVVNKFLPEVSLHEVSRLSTWPSQFHQGGGAKEDNIALYFFAKDIESYERYYKSLLD 830
+V +VVNKF SL+EV R STWP+QF + G KE +IAL+FFAKD ESYER YK L+D
Sbjct: 868 RVAEVVNKFPETFSLNEVPRKSTWPTQFEKLG-TKEAHIALFFFAKDTESYERNYKPLVD 926
Query: 831 HMIKNDLALKGTFDGVELLIFTSNQLPENSQRWNTLFFLWGIFRGRRINHSDSAKKICIP 890
+MIKNDLALKG D V+LLIF SNQLP N QRWN L+FLWG+F+GR+ ++ K +P
Sbjct: 927 NMIKNDLALKGNLDNVDLLIFASNQLPSNCQRWNMLYFLWGVFQGRK--ETNPQKNTSLP 984
Query: 891 SLNVIPNEK 899
+ NV+P ++
Sbjct: 985 TSNVLPRDR 993
Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 169/471 (35%), Positives = 242/471 (51%), Gaps = 77/471 (16%)
Query: 269 IVEHDVKVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHAEGS 328
+VEHDVKVCDICGD+GREDLLAIC CSDGAEHTYCMREML++VPEGDWLCEEC +
Sbjct: 278 MVEHDVKVCDICGDAGREDLLAICSGCSDGAEHTYCMREMLDEVPEGDWLCEECAEE--A 335
Query: 329 ANLRLDAEVNKNRKVSSSSQISGKRPSESVEVAIAAKRQALESSTGSPKASNPKKTVSLS 388
+ +A+ + +V+ ++ SGKR ++ +E A AKRQ +E+STGSPK S + +LS
Sbjct: 336 EKQKQEAKRKRETEVTFNTYSSGKRHADKIEAAPDAKRQVVEASTGSPKKSILPRVGALS 395
Query: 389 RESSFKSLDNGKVKPGQQIPIRNHHGGDDIALARSLSTGPRSQAARSTLLKXXXXXXXXX 448
RE+SFK LD + K Q DD ARS G + Q + LK
Sbjct: 396 RETSFKGLDRLRGKLNHQTSF-----SDDTESARS--AGSQLQPPKGAFLKSSSFNCSSS 448
Query: 449 KPRAKLIDEVVPQKQKGGGQYISKNMDTPAGL--MSKSMSFKSSNLGRA--TDSKVKMLS 504
KP+ +L+D+ + +QK G + + ++ G + KSM ++++ G + +DS+ KML
Sbjct: 449 KPKVQLMDDAIHPRQKTGKEDTALDLKV-GGFRNVGKSMPSRTTDAGNSGGSDSQAKMLG 507
Query: 505 SKPGTAQDLKGSRHGKESGVFDRKTLSRIDRPVVSASKGDQKLTPRGETAKPSAVNHNRE 564
SK +Q+ K + K+ R SAS DQKL RG ++ S N+NR+
Sbjct: 508 SKVYHSQEGKSLKQVKD----------RNREANASASSIDQKLKSRGNSSV-SHANNNRD 556
Query: 565 FK-VNQDGKLNSLSKSMNNIGHKSRELQERTSTSGHETQ--------------------- 602
K + DGK +L+K ++N+ SR E + SG +
Sbjct: 557 LKGLQSDGKRGNLTKQVSNL---SRNRLENSVVSGGDISTNEKCSASEQSSSQADCKDEL 613
Query: 603 ------------------QNGLPRSRDTANQIDKTKDGCSDRVRSSLTNTSECCTI---- 640
Q+GLPRSR K+K+ S R RSSL ++
Sbjct: 614 PSTSCTGEGMPNHGTVALQDGLPRSRVPREVGKKSKEAFSKRQRSSLLAGAKGLPSSQKG 673
Query: 641 GGTQELGDEVSVN-----ATSSSKEEMHNGNSLKAAIHAALLRRPEIHKKK 686
G T E D V+ T + KE+++ GN L+AA+ AAL ++P K +
Sbjct: 674 GQTAESSDTSGVSDSDLSTTKNVKEDLNKGNRLRAAVDAALRKKPSFGKNR 724
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 2 RLEPGTCKVCSAPCSTCIHLNRVAMGSKAEEYSDENCRVGEANQ-YXXXXXXXXXXXXRA 60
++E GTC VCSAPCS+C+H N GSK +E SDENC +Q A
Sbjct: 18 KVESGTCNVCSAPCSSCMHRNVGFTGSKLDESSDENCHGVVGSQCSVNEDDLLPSSMVNA 77
Query: 61 CNRLKDAVTKTSNTPSDHSSHDFLSENAESKPTL 94
L + ++ SN +SSHD LSENAESK T+
Sbjct: 78 HKSLNNTASEASNLV--NSSHDALSENAESKETI 109
>AT1G43770.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:16548509-16550257 FORWARD LENGTH=431
Length = 431
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 17/249 (6%)
Query: 640 IGGTQELGDEVSVNATSSSKEEMHN-----GNSLKAAIHAALLRRPEIHKKKDVPERTA- 693
+ GT + + V V+++S +KE M + +S K L+ E VPE +
Sbjct: 185 LQGTTNVVEPVEVSSSSPTKETMESKRQESSDSRKPHELTCLVGDSETANSSSVPEHNSC 244
Query: 694 -----DFRSQPRKSDSVGSASGKPVVKDLLNRALEISNVISKTSAIPEYKYIWQGVFEVH 748
S ++ +S V + + L N ++ IP IW+G+ V
Sbjct: 245 AVKKRKLSSGNKQIQLADGSSSCRVAESNMPLTLTSRNYRAQPIKIP----IWRGLMSV- 299
Query: 749 RSGKPPDLYTGIQAHLSSCASPKVLDVVNKFLPEVSLHEVSRLSTWPSQFHQGGGAKEDN 808
G GI AH+SS A PKV + + +S + RL WP F + GG K+++
Sbjct: 300 -KGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTFLKNGGPKDES 358
Query: 809 IALYFFAKDIESYERYYKSLLDHMIKNDLALKGTFDGVELLIFTSNQLPENSQRWNTLFF 868
+AL+FF + E+ + SL+D M KND A++ + ELL+FTS LP++S +N+ ++
Sbjct: 359 VALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYMLPKDSWTFNSKYY 418
Query: 869 LWGIFRGRR 877
LWG+F+ R+
Sbjct: 419 LWGVFKPRQ 427
>AT4G17850.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT3G02890.1); Has 200 Blast hits to 194 proteins
in 51 species: Archae - 0; Bacteria - 0; Metazoa - 61;
Fungi - 11; Plants - 116; Viruses - 0; Other Eukaryotes
- 12 (source: NCBI BLink). | chr4:9922990-9923850
FORWARD LENGTH=187
Length = 187
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 270 VEHDVKVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEEC 322
+E ++ VCD CGD G E LL ICC C GAEHTYCM E ++KVP+ W C +C
Sbjct: 33 IEREITVCDTCGDQGYEYLLVICCNCGVGAEHTYCMMEKIDKVPDS-WSCYDC 84
>AT5G61100.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: zinc ion binding (TAIR:AT5G61110.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:24579170-24580327 REVERSE LENGTH=227
Length = 227
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 275 KVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHAEGSANLRLD 334
K C++CG E L+ C C D EHTYC R M ++VP W+CEEC+ AN +
Sbjct: 32 KPCEVCGSDANELLMMTCFMCRDTREHTYCARVMFQRVPRL-WICEECRDFSSVANKTAN 90
Query: 335 AE 336
A+
Sbjct: 91 AQ 92
>AT1G43770.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:16548509-16549907 FORWARD LENGTH=371
Length = 371
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 740 IWQGVFEVHRSGKPPDLYTGIQAHLSSCASPKVLDVVNKFLPEVSLHEVSRLSTWPSQFH 799
IW+G+ V G GI AH+SS A PKV + + +S + RL WP F
Sbjct: 292 IWRGLMSV--KGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTFL 349
Query: 800 QGGGAKEDNIALYFF 814
+ GG K++++AL+FF
Sbjct: 350 KNGGPKDESVALFFF 364
>AT5G61110.1 | Symbols: | zinc ion binding | chr5:24581078-24581991
REVERSE LENGTH=161
Length = 161
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 275 KVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECK 323
K C++CG + + + C C D EH YC R L VP W+CEEC+
Sbjct: 31 KPCEVCGSNANDHAIMTCFLCRDTREHIYCARVHLRSVPRM-WICEECR 78