Miyakogusa Predicted Gene
- Lj3g3v3386760.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3386760.1 tr|Q2PEQ1|Q2PEQ1_TRIPR Arginine decarboxylase
OS=Trifolium pratense PE=2 SV=1,79.32,0,ARGININE
DECARBOXYLASE,Arginine decarboxylase;
ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE,NULL,CUFF.45779.1
(2134 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68262 similar to UniRef100_Q2PEQ1 Cluster: Arginine d... 2258 0.0
gnl|LJGI|TC79948 similar to UniRef100_Q43075 Cluster: Arginine d... 844 0.0
gnl|LJGI|TC75529 weakly similar to UniRef100_O82475 Cluster: Arg... 377 e-103
gnl|LJGI|TC59355 UniRef100_Q70KF5 Cluster: Arginine decarboxylas... 258 1e-67
gnl|LJGI|TC72418 similar to UniRef100_Q39827 Cluster: Arginine d... 232 7e-60
gnl|LJGI|TC75952 similar to UniRef100_Q39827 Cluster: Arginine d... 56 9e-07
>gnl|LJGI|TC68262 similar to UniRef100_Q2PEQ1 Cluster: Arginine decarboxylase; n=1;
Trifolium pratense|Rep: Arginine decarboxylase -
Trifolium pratense (Red clover), partial (47%)
Length = 1479
Score = 2258 bits (1139), Expect = 0.0
Identities = 1145/1147 (99%)
Strand = Plus / Plus
Query: 988 gatattggtggtggtttgggcatagattatgatggttctaagtccacggattctgatatc 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gatattggtggtggtttgggcatagattatgatggttctaagtccacggattctgatatc 68
Query: 1048 tctgttgggtatagtcttgaagagtatgctgcagctgttgttcacacggtgaagaatgtt 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tctgttgggtatagtcttgaagagtatgctgcagctgttgttcacacggtgaagaatgtt 128
Query: 1108 tgtgacagcaggaacgtgaggcatcctgtgatttgcagtgagagtggcagagccattgtg 1167
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgtgaccgcaggaacgtgaggcatcctgtgatttgcagtgagagtggcagagccattgtg 188
Query: 1168 tctcatcattcagtgttgattttcgaggctgttggtgctagtggtaatagaggtagagac 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tctcatcattcagtgttgattttcgaggctgttggtgctagtggtaatagaggtagagac 248
Query: 1228 tctgcattgtccaccattgaattgcagtgtttgggagaggggttatcagaggaagctctt 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tctgcattgtccaccattgaattgcagtgtttgggagaggggttatcagaggaagctctt 308
Query: 1288 gctgattatcagaacatgtcttctgcaaccattcgaggcgagtatgaaacctgtttgcgc 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gctgattatcagaacatgtcttctgcaaccattcgaggcgagtatgaaacctgtttgcgc 368
Query: 1348 tacgcggagcagttcaagaaacggtgcgttgaacagttcaagcaagggagtttggggatg 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tacgcggagcagttcaagaaacggtgcgttgaacagttcaagcaagggagtttggggatg 428
Query: 1408 gaacagcttgcagcagtggatggtttgtgtgatttgatcactgaggcaattggggtgaac 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaacagcttgcagcagtggatggtttgtgtgatttgatcactgaggcaattggggtgaac 488
Query: 1468 gatccagttcaaaagtaccacatgaacctctctgtgttcacatcaatccctgatttctgg 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gatccagttcaaaagtaccacatgaacctctctgtgttcacatcaatccctgatttctgg 548
Query: 1528 gcattcgagcaactttttcccatagtcccaattcatcgtctcgatgagaagcctaccgcg 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gcattcgagcaactttttcccatagtcccaattcatcgtctcgatgagaagcctaccgcg 608
Query: 1588 aaggggattctatcagatttgacctgcgacagtgacgggaagattgacaagttcatcggt 1647
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 609 aaggggattctatcagatttgacctgggacagtgacgggaagattgacaagttcatcggt 668
Query: 1648 ggtgagtccagcttgccgctccatgaattggaagacgggcactactacttgggaatgttc 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggtgagtccagcttgccgctccatgaattggaagacgggcactactacttgggaatgttc 728
Query: 1708 ttgggtggggcttatgaggaggcgctcggtggtgttcacaacctgtttggtggcccaagc 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttgggtggggcttatgaggaggcgctcggtggtgttcacaacctgtttggtggcccaagc 788
Query: 1768 gtggtgagggtggtgcagagcgacgggcctcacggtttcgcggtgacgcgtgcggtggct 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtggtgagggtggtgcagagcgacgggcctcacggtttcgcggtgacgcgtgcggtggct 848
Query: 1828 gggccgtcttgtggggatgtcctccgagcaatgcagcatcagccagagctcatgttcgag 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gggccgtcttgtggggatgtcctccgagcaatgcagcatcagccagagctcatgttcgag 908
Query: 1888 accctcaagcatcgcgtgctggagtttgatcaggatgaagtgaatgctgctgcagtggtg 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 accctcaagcatcgcgtgctggagtttgatcaggatgaagtgaatgctgctgcagtggtg 968
Query: 1948 gctagcctcgcgcgttccttcgacaaaatgccttatctggttgcggctaagccttgttgc 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 gctagcctcgcgcgttccttcgacaaaatgccttatctggttgcggctaagccttgttgc 1028
Query: 2008 ttcaatgctgttagtaatggtggtttttaccactgctccggtgatgatttcagtgctgat 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ttcaatgctgttagtaatggtggtttttaccactgctccggtgatgatttcagtgctgat 1088
Query: 2068 tctggtggcggcggcggcggcagcgctggtggagaagaggagcattggtcttattgctgt 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 tctggtggcggcggcggcggcagcgctggtggagaagaggagcattggtcttattgctgt 1148
Query: 2128 gcttgag 2134
|||||||
Sbjct: 1149 gcttgag 1155
>gnl|LJGI|TC79948 similar to UniRef100_Q43075 Cluster: Arginine decarboxylase; n=1;
Pisum sativum|Rep: Arginine decarboxylase - Pisum sativum
(Garden pea), partial (19%)
Length = 466
Score = 844 bits (426), Expect = 0.0
Identities = 457/466 (98%), Gaps = 1/466 (0%)
Strand = Plus / Plus
Query: 951 tgaactgcttcgactaggtgcccagatgagagttcttgatattggtggtggtttgggcat 1010
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgaactgcttcgactgggtgcccatatgcgagttcttgatattggtggtggtttgggcat 60
Query: 1011 agattatgatggttctaagtccacggattctgatatctctgttgggtatagtcttgaaga 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agattatgatggttctaagtccacggattctgatatctctgttgggtatagtcttgaaga 120
Query: 1071 gtatgctgcagctgttgttcacacggtgaagaatgtttgtgacagcaggaacgtgaggca 1130
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 121 gtatgctgcagctgttgttcacacggtgaagaatgtttgtgaccgcaacaacgtgaggca 180
Query: 1131 tcctgtgatttgcagtgagagtggcagagccattgtgtctcatcattcagtgttgatttt 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcctgtgatttgcagtgagagtggcagagccattgtgtctcatcattcagtgttgatttt 240
Query: 1191 cgaggctgttggtgctagtggtaatagaggtagagactctgcattgtccaccattgaatt 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgaggctgttggtgctagtggtaatagaggtagagactctgcattgtccaccattgaatt 300
Query: 1251 gcagtgtttgggagaggggttatcagaggaagctcttgctgattatcagaacatgtcttc 1310
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcagtgtttgggagaggggtcatcagaggaagctcttgctgattatcagaacatgtcttc 360
Query: 1311 tgcaaccattcgaggcgagtatgaaacctgtttgcgctacgcggagcagttcaagaaacg 1370
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 361 tgcaaccattcgaggcgagtatgaaacctgtttgcgctacgccgagcagttcaagaaacg 420
Query: 1371 gtgcg-ttgaacagttcaagcaagggagtttggggatggaacagct 1415
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtgcgtttgaacagttcaagcaagggagtttggggatggaacagct 466
>gnl|LJGI|TC75529 weakly similar to UniRef100_O82475 Cluster: Arginine decarboxylase;
n=1; Brassica juncea|Rep: Arginine decarboxylase -
Brassica juncea (Leaf mustard) (Indian mustard), partial
(5%)
Length = 629
Score = 377 bits (190), Expect = e-103
Identities = 193/194 (99%)
Strand = Plus / Plus
Query: 1 atgccggccatggcgtgtggcgctgctgttctcccccttcccggctacactctcgccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgccggccatggcgtgtggcgctgctgttctcccccttcccggctacactctcgccgga 495
Query: 61 gacacagacacctctcttccgcctccgccgccgctcacattttccgccgacgacacctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gacacagacacctctcttccgcctccgccgccgctcacattttccgccgacgacacctgg 555
Query: 121 tcgccctccttgtcgtctaagctttacaggatcgacgcctggggcggtccttactttacc 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 556 tcgccctccttgtcgtctaagctttaccggatcgacgcctggggcggtccttactttacc 615
Query: 181 gtcaactccgccgg 194
||||||||||||||
Sbjct: 616 gtcaactccgccgg 629
>gnl|LJGI|TC59355 UniRef100_Q70KF5 Cluster: Arginine decarboxylase; n=1; Lotus
japonicus|Rep: Arginine decarboxylase - Lotus japonicus,
partial (98%)
Length = 1950
Score = 258 bits (130), Expect = 1e-67
Identities = 532/666 (79%)
Strand = Plus / Plus
Query: 411 ttaccagggtgtgttccctgtgaagtgcaaccaggaccggttcgttgtggaggatattgt 470
||||||||| || | ||| ||||| |||||||||||| ||||||| |||||||| || ||
Sbjct: 82 ttaccagggggtttacccggtgaaatgcaaccaggacaggttcgtggtggaggacatcgt 141
Query: 471 gaagttcggttcgtcgttccggttcgggttggaggcagggtcgaagccagagcttcttct 530
|| |||||||| |||||||||||||| |||||| ||||||| || ||||||||||| |
Sbjct: 142 gagattcggttcttcgttccggttcggtttggagtcagggtctaaaccagagcttctcat 201
Query: 531 ggctatgagctgtttgtgtaagggaaacagagaagcgtttctcgtctgcaacgggttcaa 590
||||||||| ||| | || || || ||| ||||||| ||||| |||| || || |||||
Sbjct: 202 ggctatgagttgtctatgcaaaggcaacgcagaagcgcttctcatctgtaatggattcaa 261
Query: 591 agatagggagtatattactcttgcattggttgcgaggaaactggaattgaacactgtgat 650
|| ||||| ||| | || || ||| ||||||||| |||| ||||| | |||||
Sbjct: 262 ggacgccgagtacatttccctcgccctggctgcgaggaagctggctctgaactccgtgat 321
Query: 651 tgttctggagcaagaggaggagcttgacattgtgattgaagtcagcaacaagctctgcat 710
||| |||||||||||||||||| ||||| | | ||||| | ||||||||| | |||
Sbjct: 322 tgtgctggagcaagaggaggaggttgacctgatcattgatctgagcaacaagatgcacat 381
Query: 711 tcgtcctgtgattggggttcgagcgaagctgaggactaagcattctggccattttggagg 770
||| ||||||||||| | || ||||||||| |||| |||||||| |||||||| || ||
Sbjct: 382 tcgccctgtgattggaatgcgggcgaagctgcggaccaagcattcgggccatttcggtgg 441
Query: 771 aacttcaggggataaagggaagttcggtttgacaactacccagattcttcgtgtggtgaa 830
||||| || || | ||||| ||||| | |||||| | |||||||| | || |||||
Sbjct: 442 gacttccggtgagagggggaaattcgggctcacaactgctcagattctgagggttgtgaa 501
Query: 831 gaagcttgagcaagtgggcatgcttgattgcctgcaattgttgcatttccacattggttc 890
|||||||||||| | |||||||| |||||||||||| | ||||||| ||||| || ||
Sbjct: 502 gaagcttgagcacgctggcatgctggattgcctgcaactcctgcattttcacataggctc 561
Query: 891 tcagattccccacacagcattgctctctgatggggtgggggaagctgcacagatttactg 950
||||||||| ||| || |||||| ||||||| ||||| |||||||| ||||| || ||
Sbjct: 562 tcagattccttccaccgcgttgctcgctgatggtgtgggagaagctgcgcagatctattg 621
Query: 951 tgaactgcttcgactaggtgcccagatgagagttcttgatattggtggtggtttgggcat 1010
||||||| |||| || || || || ||| |||| |||||||||| ||||| | |||||
Sbjct: 622 tgaactggttcgtctcggggctcaaatgcgagtcattgatattggaggtggcctcggcat 681
Query: 1011 agattatgatggttctaagtccacggattctgatatctctgttgggtatagtcttgaaga 1070
||||| || ||| | || || | || ||||||||||||||||||||| ||||| ||||
Sbjct: 682 tgattacgacggtacaaaatctagtgactctgatatctctgttgggtatggtcttcaaga 741
Query: 1071 gtatgc 1076
||||||
Sbjct: 742 gtatgc 747
Score = 139 bits (70), Expect = 8e-32
Identities = 291/364 (79%), Gaps = 3/364 (0%)
Strand = Plus / Plus
Query: 1543 tttcccatagtcccaattcatcgtctcgatgagaagcctaccgcgaaggggattctatca 1602
|||||||| |||| ||||| || |||||||||||||| || | ||| || || || ||
Sbjct: 1211 tttcccattatccccattcaccgcctcgatgagaagcccactgtgaaaggcatcctctct 1270
Query: 1603 gatttgacctgcgacagtgacgggaagattgacaagttcatcggtggtgagtccagcttg 1662
||| ||||||| |||||||| ||||||||||||||||||||| || ||||| ||||||
Sbjct: 1271 gatctgacctgtgacagtgatgggaagattgacaagttcatcaacggagagtcaagcttg 1330
Query: 1663 ccgctccatgaattggaagacgggc---actactacttgggaatgttcttgggtggggct 1719
|| | || || ||||||| ||| | ||||| |||||||||||||||| || |||
Sbjct: 1331 gcgatgcacgagttggaaggtgggaggaagtactatctgggaatgttcttgggcggtgct 1390
Query: 1720 tatgaggaggcgctcggtggtgttcacaacctgtttggtggcccaagcgtggtgagggtg 1779
|||||||||||||| |||||| |||||| ||||||| || || |||||||| |||||
Sbjct: 1391 tatgaggaggcgcttggtggttaccacaacttgtttggaggtcccagcgtggttcgggtg 1450
Query: 1780 gtgcagagcgacgggcctcacggtttcgcggtgacgcgtgcggtggctgggccgtcttgt 1839
|||||||||| || || ||| | ||||||||||||||||| || | || || || |
Sbjct: 1451 ttgcagagcgaaggtccacacagcttcgcggtgacgcgtgcaatgccgggtccttccaat 1510
Query: 1840 ggggatgtcctccgagcaatgcagcatcagccagagctcatgttcgagaccctcaagcat 1899
|| || || || |||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 1511 ggagacgtacttcgagtgatgcagcaccagcctgagctcatgtttgagactctcaagcac 1570
Query: 1900 cgcg 1903
||||
Sbjct: 1571 cgcg 1574
>gnl|LJGI|TC72418 similar to UniRef100_Q39827 Cluster: Arginine decarboxylase; n=1;
Glycine max|Rep: Arginine decarboxylase - Glycine max
(Soybean), partial (50%)
Length = 1113
Score = 232 bits (117), Expect = 7e-60
Identities = 582/737 (78%)
Strand = Plus / Plus
Query: 226 acgctggctcaccaggagattgatctgctcaaggtcgtgaagaaagcgtccgacccgaaa 285
|||||| |||||||||||||||||||| | ||| |||||||||| || || || || |||
Sbjct: 255 acgctgtctcaccaggagattgatctgttgaagatcgtgaagaaggcctctgatcccaaa 314
Query: 286 tgctgcggcggactcgggttgcagctgcctctcgttatccggttcccggatgctctcaag 345
| ||||| || ||||| | ||||| || ||| || | |||||||| |||| | | |||
Sbjct: 315 tcttgcggtggtctcggtctccagcttccgctcattgtacggttccctgatgttttgaag 374
Query: 346 aaccgggttgagtcccttcaatctgccttcgactgcgcgattcaatcgcaggggtatgag 405
||||| | ||||| || ||||| || || |||| || | || || |||||||||
Sbjct: 375 aaccgattggagtctctgcaatcggcgtttgactatgctgtccagtctgaggggtatggc 434
Query: 406 tccagttaccagggtgtgttccctgtgaagtgcaaccaggaccggttcgttgtggaggat 465
||| ||||||||| || | ||| ||||| |||||||||||| ||||||| ||||||||
Sbjct: 435 tcccattaccagggggtttacccggtgaaatgcaaccaggacaggttcgtggtggaggac 494
Query: 466 attgtgaagttcggttcgtcgttccggttcgggttggaggcagggtcgaagccagagctt 525
|| |||| |||||||| |||||||||||||| |||||| ||||||| || |||||||||
Sbjct: 495 atcgtgagattcggttcttcgttccggttcggtttggagtcagggtctaaaccagagctt 554
Query: 526 cttctggctatgagctgtttgtgtaagggaaacagagaagcgtttctcgtctgcaacggg 585
|| |||||||||| ||| | || || || ||| ||||||| ||||| |||| || ||
Sbjct: 555 ctcatggctatgagttgtctatgcaaaggcaacgcagaagcgcttctcatctgtaatgga 614
Query: 586 ttcaaagatagggagtatattactcttgcattggttgcgaggaaactggaattgaacact 645
||||| || ||||| ||| | || || ||| ||||||||| |||| ||||| |
Sbjct: 615 ttcaaggacgccgagtacatttccctcgccctggctgcgaggaagctggctctgaactcc 674
Query: 646 gtgattgttctggagcaagaggaggagcttgacattgtgattgaagtcagcaacaagctc 705
|||||||| |||||||||||||||||| ||||| | | ||||| | ||||||||| |
Sbjct: 675 gtgattgtgctggagcaagaggaggaggttgacctgatcattgatctgagcaacaagatg 734
Query: 706 tgcattcgtcctgtgattggggttcgagcgaagctgaggactaagcattctggccatttt 765
|||||| ||||||||||| | || ||||||||| |||| |||||||| ||||||||
Sbjct: 735 cacattcgccctgtgattggaatgcgggcgaagctgcggaccaagcattcgggccatttc 794
Query: 766 ggaggaacttcaggggataaagggaagttcggtttgacaactacccagattcttcgtgtg 825
|| || ||||| || || | ||||| ||||| | |||||| | |||||||| | ||
Sbjct: 795 ggtgggacttccggtgagagggggaaattcgggctcacaactgctcagattctgagggtt 854
Query: 826 gtgaagaagcttgagcaagtgggcatgcttgattgcctgcaattgttgcatttccacatt 885
||||||||||||||||| | |||||||| |||||||||||| | ||||||| |||||
Sbjct: 855 gtgaagaagcttgagcacgctggcatgctggattgcctgcaactcctgcattttcacata 914
Query: 886 ggttctcagattccccacacagcattgctctctgatggggtgggggaagctgcacagatt 945
|| ||||||||||| ||| || |||||| ||||||| ||||| |||||||| |||||
Sbjct: 915 ggctctcagattccttccaccgcgttgctcgctgatggtgtgggagaagctgcgcagatc 974
Query: 946 tactgtgaactgcttcg 962
|| ||||||||| ||||
Sbjct: 975 tattgtgaactggttcg 991
>gnl|LJGI|TC75952 similar to UniRef100_Q39827 Cluster: Arginine decarboxylase; n=1;
Glycine max|Rep: Arginine decarboxylase - Glycine max
(Soybean), partial (14%)
Length = 720
Score = 56.0 bits (28), Expect = 9e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 226 acgctggctcaccaggagattgatctgctcaaggtcgtgaagaa 269
|||||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 649 acgctgtctcaccaggagattgatctgttgaagatcgtgaagaa 692