Miyakogusa Predicted Gene
- Lj3g3v3336270.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3336270.1 Non Characterized Hit- tr|I1LJM3|I1LJM3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54168
PE,43.6,8e-25,coiled-coil,NULL; seg,NULL; DNA-binding pseudobarrel
domain,DNA-binding pseudobarrel domain; no desc,CUFF.45595.1
(379 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g046200.1 | plant-specific B3-DNA-binding domain protein |... 149 4e-36
Medtr1g046320.1 | plant-specific B3-DNA-binding domain protein |... 145 5e-35
Medtr1g046340.1 | plant-specific B3-DNA-binding domain protein |... 136 3e-32
>Medtr1g046200.1 | plant-specific B3-DNA-binding domain protein | LC
| chr1:17394491-17392825 | 20130731
Length = 324
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 105/169 (62%), Gaps = 8/169 (4%)
Query: 212 LTKKRKSHPKVCKVSSKREIGSSSV-TKAEDAGHENIDAAMYIRRDHPYFIVKLLKGRRN 270
+++ + H + C IGSSS +K ED + IDA +YI+ +P+FI K + R N
Sbjct: 161 ISRSKHQHCRTCCKCKAGNIGSSSARSKLED---DEIDAEIYIQPGNPHFIAKYIHSRPN 217
Query: 271 ELHIPHLIIKDFSLCFKNKITLVCCQCQNIPRTQLRNYHGTLPQLTPANKKHTEE-GELS 329
EL IP +IKDF LCF +TL CC C++I L YH LPQ++ H E+ G++
Sbjct: 218 ELFIPKNVIKDFCLCFTKHVTLECCHCKDIQSNDLAAYHHILPQISTI---HIEKRGQVR 274
Query: 330 VWRDGRVCIKGWLHFCRKNKIKENDSCICEIVLREDQPIEMFRVHVANK 378
WRDGRV + GW FCRK+KI ENDSC+CEIVLRED I + RVHV K
Sbjct: 275 TWRDGRVRVLGWEDFCRKSKITENDSCLCEIVLREDGTIRILRVHVVRK 323
>Medtr1g046320.1 | plant-specific B3-DNA-binding domain protein | LC
| chr1:17453878-17455875 | 20130731
Length = 337
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 104/164 (63%), Gaps = 8/164 (4%)
Query: 217 KSHPKVCKVSSKREIGSSSV-TKAEDAGHENIDAAMYIRRDHPYFIVKLLKGRRNELHIP 275
KS + C+ +IGSSS + ED + IDA MYI+ +P+FI K R NELH P
Sbjct: 176 KSGHQHCRTCKAWDIGSSSAGSNLED---DEIDAEMYIQPGNPHFIAKHSLYRPNELHFP 232
Query: 276 HLIIKDFSLCFKNKITLVCCQCQNIPRTQLRNYHGTLPQLTPANKKHTEE-GELSVWRDG 334
+IKDF +CF + LVCC C++I R ++ YH LPQ++ +HTE+ GE+ W++G
Sbjct: 233 KNVIKDFCVCFTKYVNLVCCHCKDIKRNEIEAYHHILPQIST---RHTEKRGEIRTWKNG 289
Query: 335 RVCIKGWLHFCRKNKIKENDSCICEIVLREDQPIEMFRVHVANK 378
RV + GW FCRK KI END C+CE+V+R + IEM RVH+ K
Sbjct: 290 RVLVLGWEDFCRKCKITENDRCLCELVMRNGEAIEMIRVHIVRK 333
>Medtr1g046340.1 | plant-specific B3-DNA-binding domain protein | LC
| chr1:17460534-17462010 | 20130731
Length = 335
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 94/150 (62%), Gaps = 6/150 (4%)
Query: 231 IGSSSVTKAEDAGHENIDAAMYIRRDHPYFIVKLLKGRRNELHIPHLIIKDFSLCFKNKI 290
IGSSS A + + IDA MYI+ +PYF K R N L+I +IKDF LCF I
Sbjct: 191 IGSSSA--APNLEDDEIDAEMYIQPGNPYFYAKHYDYRPNILNISKNVIKDFCLCFTKHI 248
Query: 291 TLVCCQCQNIPRTQLRNYHGTLPQLTPANKKHTEE-GELSVWRDGRVCIKGWLHFCRKNK 349
T+VCC C+++ + Y LPQ+ KH E+ GE+ W+DGRV ++GW FCRK+K
Sbjct: 249 TIVCCHCKDVQSNGIAAYRHILPQMRT---KHIEKRGEVRKWKDGRVFVRGWEDFCRKSK 305
Query: 350 IKENDSCICEIVLREDQPIEMFRVHVANKK 379
I END C+CE+VLR + IEM RVHV +K
Sbjct: 306 ITENDKCLCELVLRNGKSIEMLRVHVVREK 335
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 2 DFVFFTHVEDNVFNFKICELSTGCEKMKVEDSEEQ 36
DF+ FTH+E+NVF FKI ELS+ C+KMKV D EE
Sbjct: 84 DFLVFTHIENNVFKFKILELSSMCQKMKVMDEEEN 118