Miyakogusa Predicted Gene

Lj3g3v3336270.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v3336270.1 Non Chatacterized Hit- tr|I1LJM3|I1LJM3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54168
PE,43.6,8e-25,coiled-coil,NULL; seg,NULL; DNA-binding pseudobarrel
domain,DNA-binding pseudobarrel domain; no desc,CUFF.45595.1
         (1143 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71408 UniRef100_A2R4J9 Cluster: 60S ribosomal subunit...   198   5e-50

>gnl|LJGI|TC71408 UniRef100_A2R4J9 Cluster: 60S ribosomal subunit assembly/export
            protein loc1; n=1; Aspergillus niger|Rep: 60S ribosomal
            subunit assembly/export protein loc1 - Aspergillus niger,
            partial (5%)
          Length = 716

 Score =  198 bits (100), Expect = 5e-50
 Identities = 354/438 (80%), Gaps = 3/438 (0%)
 Strand = Plus / Plus

                                                                        
Query: 709  accaaggctgaagatgcaggacatgaaaacattgatgcagcaatgtatattcgacgtgac 768
            ||||||||||||||||||| ||||||  | |||||||||| | | |||||||  |  |||
Sbjct: 129  accaaggctgaagatgcagaacatgatgaaattgatgcagaattctatattcacccggac 188

                                                                        
Query: 769  catccctacttcattgtcaaactactgaaaggcaggcgcaatgaattgcatattccacac 828
             |||||||||||  ||| ||||||  ||||   || | ||| || |||||||||||||| 
Sbjct: 189  aatccctacttccctgttaaactatggaaaactagacccaacgatttgcatattccacat 248

                                                                        
Query: 829  ttaatcatcaaagacttttccctttgttttaaaaacaagataactcttgtatgctgccag 888
              | || ||||||||||||||| ||| |||  ||| ||  | || ||||| || ||||||
Sbjct: 249  acagtcctcaaagacttttccccttggtttggaaaaaaagtcacccttgtgtgttgccag 308

                                                                        
Query: 889  tgccagaatattccaagaactcaactgcgaaactaccatggcaccttgcctcaact---g 945
            || |||||||||| ||||| | |||| | ||||||||||  || ||||| |||||    |
Sbjct: 309  tgtcagaatattcaaagaaatgaacttcaaaactaccatctcagcttgcatcaacaacag 368

                                                                        
Query: 946  acacccgccaacaaaaaacacacagaagagggagaattaagcgtgtggagagatgggcga 1005
            ||| ||  || || || ||||||||||| ||||||| ||     ||||| ||||||||||
Sbjct: 369  acatccatcagcagaagacacacagaagtgggagaagtagctaggtggaaagatgggcga 428

                                                                        
Query: 1006 gtgtgtatcaaagggtggttacatttttgcagaaagaacaagatcaaagaaaacgattca 1065
            |||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||| ||
Sbjct: 429  gtgtgtatcaaagggtggttatcttttcgcagaaagaacaagatcaaagaaaatgatgca 488

                                                                        
Query: 1066 tgcatctgtgaaattgtgttgcgggaagaccaaccaatagaaatgttccgggtgcatgta 1125
            ||||||||||||||||||| || |||| | |||  |||||||||| | ||||||||||||
Sbjct: 489  tgcatctgtgaaattgtgtggcaggaacatcaagaaatagaaatgatacgggtgcatgta 548

                              
Query: 1126 gctaataagaagtgaaca 1143
            || || ||||| ||||||
Sbjct: 549  gcaaagaagaaatgaaca 566