Miyakogusa Predicted Gene

Lj3g3v3259390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3259390.1 Non Chatacterized Hit- tr|A5AXB0|A5AXB0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,31.01,0.0000000000004,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.45531.1
         (334 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12070.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   375   e-104

>AT4G12070.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:7231941-7234272 FORWARD LENGTH=483
          Length = 483

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/343 (58%), Positives = 233/343 (67%), Gaps = 23/343 (6%)

Query: 1   MVNALTKTRLQDGFVSYPWERRMHELLSVPNSSNFLSILLLPRAS--DMNASHYNDLEDT 58
           MV AL K +LQDG+VSYPWERRM E L +  SSNFLSIL LP+AS      S YNDLEDT
Sbjct: 147 MVEALVKAKLQDGYVSYPWERRMQEALPISGSSNFLSILFLPKASAYGRTGSRYNDLEDT 206

Query: 59  XXXXXXXXXXXXXSGVPIVFMNIQTESLLTKISGDTASSTVNAGSLSDLANLANVSLYGF 118
                        +GVPIVFMNIQTESLLTKISG+TAS+TVN  SLSDL+NLAN SLYGF
Sbjct: 207 LARANAWLSCSQANGVPIVFMNIQTESLLTKISGETASATVNTTSLSDLSNLANTSLYGF 266

Query: 119 EDYHGVDIGVVRAVRLWYAPIGGEFSVEIKLKEGDAKLGFAISRTEEGFIFISSVTDDGQ 178
           EDYHGVDIGVVRAVRLW+AP+G EF +EIKLK+ D KLGF+ISRTEEGFI++SSVTD   
Sbjct: 267 EDYHGVDIGVVRAVRLWFAPLGVEFPLEIKLKDDDTKLGFSISRTEEGFIYVSSVTDHED 326

Query: 179 ENAPATRSGLSNLYRKARNTSKLLVVSRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLH 238
           E+APA RSGLS+LYR+A   S+ LVVSR+ NQ+VLPWMVSSTGAIRCYDTVSLSQKLSLH
Sbjct: 327 ESAPAARSGLSSLYREAAKASRRLVVSRVGNQKVLPWMVSSTGAIRCYDTVSLSQKLSLH 386

Query: 239 RHTNVPILLHVFLWDRASLTSSNAESTKLRAXXXXXXXXXXXXXXASHP----------- 287
           RH  V I LHVFLWD +S T+  +   +  +                 P           
Sbjct: 387 RHAKVHIGLHVFLWD-SSATADFSSPPRSSSGGTHLLFSNETLDSTEFPRYGEVLPPRQV 445

Query: 288 NENQIQPFPQEXXXXXXXXXXXXQLERGTAGDLSFRFHDLSLS 330
            + Q+ P P E            + ER  AG+ SF+F ++  +
Sbjct: 446 GDRQVMPLPDE---------DVFRFERENAGNASFKFQEIPFT 479