Miyakogusa Predicted Gene

Lj3g3v2809850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2809850.1 Non Chatacterized Hit- tr|I1M084|I1M084_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,34.51,0.000002,seg,NULL; Ring finger,Zinc finger, RING-type;
ZF_RING_1,Zinc finger, RING-type, conserved site; RING,CUFF.44718.1
         (511 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44280.1 | Symbols: ATRING1A, RING1A | RING 1A | chr5:1783611...   300   1e-81
AT1G03770.1 | Symbols: ATRING1B, RING1B | RING 1B | chr1:944772-...   254   1e-67
AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944772-947431 FOR...   248   1e-65
AT1G03770.3 | Symbols: RING1B | RING 1B | chr1:944772-947431 FOR...   247   1e-65
AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:1783611...   232   4e-61
AT1G28327.1 | Symbols:  | unknown protein; Has 52 Blast hits to ...    62   1e-09

>AT5G44280.1 | Symbols: ATRING1A, RING1A | RING 1A |
           chr5:17836115-17839114 REVERSE LENGTH=522
          Length = 522

 Score =  300 bits (769), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 188/406 (46%), Positives = 238/406 (58%), Gaps = 21/406 (5%)

Query: 118 FVYVPVQDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 177
           F+ + + +IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR HCAS
Sbjct: 122 FMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRKHCAS 181

Query: 178 RRSLRDDPNYDALIASLYPDIXXXXXXXXXXXXXXKNRNKQIQASIAKIVQRQSEALVKR 237
           RRSLRDDP +DALIA+L+ +I                RNKQIQASIA+I QRQSEALVKR
Sbjct: 182 RRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQISQRQSEALVKR 241

Query: 238 RR-DTPGAFAPRSQRNQRNIHSRRQNQVIDIQGXXXXXXXXXXXXX------XXXXXXXR 290
           R      A   RS R       RR ++ ++ Q                           R
Sbjct: 242 RSLGKEAAVLMRSPRIASGSRRRRNSRNMEQQNASEAHEDDDNDDNNNRGRDKDSSSDER 301

Query: 291 CTEPPQRRRKRWTRVRPSQ-PSSSMAGP-DGGCVDSDIDVSRENRGTS-RQVSKPRKLTW 347
            TE  Q++R++ +  R +Q PSSS A   +G C D+D +V R+ +G S   V  P  L W
Sbjct: 302 GTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDTKGISPGLVWNPEILAW 361

Query: 348 GRGGFRSNTRHXXXXXXXXXXXX-XXRLAKLVGHLR-SLDENIDEFDVHLLLVSLD-KST 404
           GRGG RSNTRH               R+ KLV +LR S+D +  E D+H+ LVSLD K  
Sbjct: 362 GRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSVELDIHVKLVSLDTKCI 421

Query: 405 PSLEQPHLCCRPTLTVKHLYEYVARQTPLPVEAVEIMAVKGCCSTNRNESADDASALVCD 464
           P L QP+LCCRPTL VK L E+VA Q  L  E VE++         R    +DA+     
Sbjct: 422 PDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVT-------RRRVGEDAAIENLP 474

Query: 465 ELTTLAIDPHKDELEILQEHESLAEIRSKCISKRD-HLILAYRQKE 509
            +T  +    KDE+  L+++E+L+ ++   IS  + HLI+AYR+K+
Sbjct: 475 AVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRKKQ 520


>AT1G03770.1 | Symbols: ATRING1B, RING1B | RING 1B |
           chr1:944772-947431 FORWARD LENGTH=460
          Length = 460

 Score =  254 bits (649), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 165/404 (40%), Positives = 222/404 (54%), Gaps = 46/404 (11%)

Query: 118 FVYVPVQDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 177
           ++ V + DI KDVQC ICLGII+KTRTVMECLHRFCRECIDKSMRLGNNECP CR HCAS
Sbjct: 89  YMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCAS 148

Query: 178 RRSLRDDPNYDALIASLYPDIXXXXXXXXXXXXXXKNRNKQIQASIAKIVQRQSEALVKR 237
           RRSLRDDPN+DALIA+L+ +I              + RNKQIQASIA++ QRQS+ALVKR
Sbjct: 149 RRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKALVKR 208

Query: 238 RRDTPGA----------FAPRSQRNQRNIHSRRQNQVIDIQGXXXXXXXXXXXXXXXXXX 287
           +    G              R +RN RNI         D                     
Sbjct: 209 KSVGKGTAILSRSRRSGGGSRRRRNCRNIEQDTSEANDD-------------DDQNKRGK 255

Query: 288 XXRCTEPPQRRRKRWTRVRPSQPSSSMAGPDGGCVDSDIDVSRENRGTS-RQVSKPRKLT 346
                EP +R+RK+ +  +PS  +++      G   ++    R++R  S   V     + 
Sbjct: 256 DSSSDEPCERQRKKRSATQPSSSNANNNDNCAG-NGTEQTHQRDSRVISPVLVWNSELIA 314

Query: 347 WGRGGFRSNTRHXXXXXXXXXXXXXXRLAKLVGHLRSLDENIDEFDVHLLLVSLD-KSTP 405
           WGRGG RSNTR               RL +LV +L SL+ N  E D+HL LVSLD +   
Sbjct: 315 WGRGGTRSNTRQ-GNNNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLL 373

Query: 406 SLEQPHLCCRPTLTVKHLYEYVARQTPLPVEAVEIMAVKGCCSTNRNESADDASALVCDE 465
           +L +P+LC RPTL VK L EYVAR   L  E VE++  K            D   ++ ++
Sbjct: 374 NLHEPYLCFRPTLLVKQLREYVARHLKLKAEEVELLVSK------------DGDTVIGNK 421

Query: 466 LTTLAIDPHKDELEILQEHESLAEIRSKCISKRDHLILAYRQKE 509
            +T       ++++ LQ+ E++A+++  CIS   ++I+ YR+K+
Sbjct: 422 TST-------EKMQSLQDDETVAKLKVDCISSNGYMIVVYRRKQ 458


>AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944772-947431
           FORWARD LENGTH=468
          Length = 468

 Score =  248 bits (632), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 165/410 (40%), Positives = 222/410 (54%), Gaps = 52/410 (12%)

Query: 118 FVYVPVQDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 177
           ++ V + DI KDVQC ICLGII+KTRTVMECLHRFCRECIDKSMRLGNNECP CR HCAS
Sbjct: 91  YMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCAS 150

Query: 178 RRSLRDDPNYDALIASLYPDIXXXXXXXXXXXXXXKNRNKQIQASIAKIVQRQSEALVKR 237
           RRSLRDDPN+DALIA+L+ +I              + RNKQIQASIA++ QRQS+ALVKR
Sbjct: 151 RRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKALVKR 210

Query: 238 RRDTPGA----------FAPRSQRNQRNIHSRRQNQVIDIQGXXXXXXXXXXXXXXXXXX 287
           +    G              R +RN RNI         D                     
Sbjct: 211 KSVGKGTAILSRSRRSGGGSRRRRNCRNIEQDTSEANDD-------------DDQNKRGK 257

Query: 288 XXRCTEPPQRRRKRWTRVRPSQPSSSMAGPDGGCVDSDIDVSRENRGTS-RQVSKPRKLT 346
                EP +R+RK+ +  +PS  +++      G   ++    R++R  S   V     + 
Sbjct: 258 DSSSDEPCERQRKKRSATQPSSSNANNNDNCAG-NGTEQTHQRDSRVISPVLVWNSELIA 316

Query: 347 WGRGGFRSNTRHXXXXXXXXXXXXXXRLAKLVGHLRSLDENIDEFDVHLLLVSLD-KSTP 405
           WGRGG RSNTR               RL +LV +L SL+ N  E D+HL LVSLD +   
Sbjct: 317 WGRGGTRSNTRQ-GNNNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLL 375

Query: 406 SLEQPHLCCRPTLTVKHLYE------YVARQTPLPVEAVEIMAVKGCCSTNRNESADDAS 459
           +L +P+LC RPTL VK L E      YVAR   L  E VE++  K            D  
Sbjct: 376 NLHEPYLCFRPTLLVKQLREVSSLPLYVARHLKLKAEEVELLVSK------------DGD 423

Query: 460 ALVCDELTTLAIDPHKDELEILQEHESLAEIRSKCISKRDHLILAYRQKE 509
            ++ ++ +T       ++++ LQ+ E++A+++  CIS   ++I+ YR+K+
Sbjct: 424 TVIGNKTST-------EKMQSLQDDETVAKLKVDCISSNGYMIVVYRRKQ 466


>AT1G03770.3 | Symbols: RING1B | RING 1B | chr1:944772-947431
           FORWARD LENGTH=466
          Length = 466

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 165/410 (40%), Positives = 222/410 (54%), Gaps = 52/410 (12%)

Query: 118 FVYVPVQDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 177
           ++ V + DI KDVQC ICLGII+KTRTVMECLHRFCRECIDKSMRLGNNECP CR HCAS
Sbjct: 89  YMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCAS 148

Query: 178 RRSLRDDPNYDALIASLYPDIXXXXXXXXXXXXXXKNRNKQIQASIAKIVQRQSEALVKR 237
           RRSLRDDPN+DALIA+L+ +I              + RNKQIQASIA++ QRQS+ALVKR
Sbjct: 149 RRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKALVKR 208

Query: 238 RRDTPGA----------FAPRSQRNQRNIHSRRQNQVIDIQGXXXXXXXXXXXXXXXXXX 287
           +    G              R +RN RNI         D                     
Sbjct: 209 KSVGKGTAILSRSRRSGGGSRRRRNCRNIEQDTSEANDD-------------DDQNKRGK 255

Query: 288 XXRCTEPPQRRRKRWTRVRPSQPSSSMAGPDGGCVDSDIDVSRENRGTS-RQVSKPRKLT 346
                EP +R+RK+ +  +PS  +++      G   ++    R++R  S   V     + 
Sbjct: 256 DSSSDEPCERQRKKRSATQPSSSNANNNDNCAG-NGTEQTHQRDSRVISPVLVWNSELIA 314

Query: 347 WGRGGFRSNTRHXXXXXXXXXXXXXXRLAKLVGHLRSLDENIDEFDVHLLLVSLD-KSTP 405
           WGRGG RSNTR               RL +LV +L SL+ N  E D+HL LVSLD +   
Sbjct: 315 WGRGGTRSNTRQ-GNNNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLL 373

Query: 406 SLEQPHLCCRPTLTVKHLYE------YVARQTPLPVEAVEIMAVKGCCSTNRNESADDAS 459
           +L +P+LC RPTL VK L E      YVAR   L  E VE++  K            D  
Sbjct: 374 NLHEPYLCFRPTLLVKQLREVSSLPLYVARHLKLKAEEVELLVSK------------DGD 421

Query: 460 ALVCDELTTLAIDPHKDELEILQEHESLAEIRSKCISKRDHLILAYRQKE 509
            ++ ++ +T       ++++ LQ+ E++A+++  CIS   ++I+ YR+K+
Sbjct: 422 TVIGNKTST-------EKMQSLQDDETVAKLKVDCISSNGYMIVVYRRKQ 464


>AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A |
           chr5:17836115-17839114 REVERSE LENGTH=525
          Length = 525

 Score =  232 bits (592), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 164/410 (40%), Positives = 220/410 (53%), Gaps = 26/410 (6%)

Query: 118 FVYVPVQDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKS----MRLGNNECPACRT 173
           F+ + + +IRKDVQCPICL  +K  R  +   ++  ++C   S        NNECPACR 
Sbjct: 122 FMEIDLGEIRKDVQCPICLVGMKFLRLFI-SYYKENKDCDGMSPQFCATFKNNECPACRK 180

Query: 174 HCASRRSLRDDPNYDALIASLYPDIXXXXXXXXXXXXXXKNRNKQIQASIAKIVQRQSEA 233
           HCASRRSLRDDP +DALIA+L+ +I                RNKQIQASIA+I QRQSEA
Sbjct: 181 HCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQISQRQSEA 240

Query: 234 LVKRRR-DTPGAFAPRSQRNQRNIHSRRQNQVIDIQGXXXXXXXXXXXXX------XXXX 286
           LVKRR      A   RS R       RR ++ ++ Q                        
Sbjct: 241 LVKRRSLGKEAAVLMRSPRIASGSRRRRNSRNMEQQNASEAHEDDDNDDNNNRGRDKDSS 300

Query: 287 XXXRCTEPPQRRRKRWTRVRPSQ-PSSSMAGP-DGGCVDSDIDVSRENRGTS-RQVSKPR 343
              R TE  Q++R++ +  R +Q PSSS A   +G C D+D +V R+ +G S   V  P 
Sbjct: 301 SDERGTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDTKGISPGLVWNPE 360

Query: 344 KLTWGRGGFRSNTRHXXXXXXXXXXXX-XXRLAKLVGHLR-SLDENIDEFDVHLLLVSLD 401
            L WGRGG RSNTRH               R+ KLV +LR S+D +  E D+H+ LVSLD
Sbjct: 361 ILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSVELDIHVKLVSLD 420

Query: 402 -KSTPSLEQPHLCCRPTLTVKHLYEYVARQTPLPVEAVEIMAVKGCCSTNRNESADDASA 460
            K  P L QP+LCCRPTL VK L E+VA Q  L  E VE++         R    +DA+ 
Sbjct: 421 TKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVT-------RRRVGEDAAI 473

Query: 461 LVCDELTTLAIDPHKDELEILQEHESLAEIRSKCISKRD-HLILAYRQKE 509
                +T  +    KDE+  L+++E+L+ ++   IS  + HLI+AYR+K+
Sbjct: 474 ENLPAVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRKKQ 523


>AT1G28327.1 | Symbols:  | unknown protein; Has 52 Blast hits to 52
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:9932120-9933195 FORWARD LENGTH=274
          Length = 274

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 21/119 (17%)

Query: 389 DEFDVHLLLVSLDKST-PSLEQPHLCCRPTLTVKHLYE-YVARQTPLPVEAVEIMAVKGC 446
           DE D+ +LLVS+D S  P+L+ P + C+P +T+K L E YVA       E +E+  VK  
Sbjct: 171 DEMDIQVLLVSMDASVIPNLQNPQVSCKPNVTLKSLCEMYVAPYVEAQAEKIEMYVVKEL 230

Query: 447 CSTNRNESADDASALVCDELTTLAIDPHKDELEILQEHESLAEIRSKCISKRDHLILAY 505
            +                ELT   IDPH+D +EI+ + +S+  +R    +   ++I+ Y
Sbjct: 231 VA----------------ELT--MIDPHRDRVEIVNKEDSVGGLRMYNFNN-GYVIIGY 270