Miyakogusa Predicted Gene

Lj3g3v2769320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2769320.1 Non Chatacterized Hit- tr|A9PDX5|A9PDX5_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,65.56,3e-19,DUF3774,Protein of unknown function
wound-induced; seg,NULL,CUFF.44595.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr4...    78   1e-15
AT4G10270.1 | Symbols:  | Wound-responsive family protein | chr4...    78   1e-15

>AT4G10265.1 | Symbols:  | Wound-responsive family protein |
          chr4:6373226-6373477 REVERSE LENGTH=83
          Length = 83

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 2  MSSASRAWTVAASVGVVEALKDQ-GLCRWNSVIRSAQHHVKNHVRXXXXXXXXXXXXXXX 60
          MSSAS+ W VAAS+G VEALKDQ G+CRWN VIRSA  +++N++R               
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLR---------SVSQAK 51

Query: 61 XMVSNRXXXXXXXXXXXXXXRTVMYLSCWGPN 92
           + S+               RTVMYLSCWGP+
Sbjct: 52 KLSSSSIDYTNKTKQAEESLRTVMYLSCWGPS 83


>AT4G10270.1 | Symbols:  | Wound-responsive family protein |
          chr4:6374805-6375077 FORWARD LENGTH=90
          Length = 90

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 2  MSSASRAWTVAASVGVVEALKDQ-GLCRWNSVIRSAQHHVKNHVRXXXXXXXXXXXXXXX 60
          MSS S+AWTVA S+G VEALKDQ GLCRWN ++RS   H++N+VR               
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 XMVSNRXXXXXXXXXXXXXXRTVMYLSCWGPN 92
           + S                RTVMYLSCWGPN
Sbjct: 61 AVTS--SGESEKAKKAEESLRTVMYLSCWGPN 90