Miyakogusa Predicted Gene

Lj3g3v2655630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2655630.1 tr|A3LNE7|A3LNE7_PICST Poly(A)-binding protein
binding protein (Fragment) OS=Scheffersomyces
stipiti,29.86,2e-18,ATAXIN 2-RELATED,NULL; coiled-coil,NULL; SM-ATX,SM
domain found in ataxin-2; LsmAD,LsmAD domain; seg,CUFF.44339.1
         (523 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g019560.2 | CTC-interacting domain protein | HC | chr8:691...   724   0.0  
Medtr8g019560.1 | CTC-interacting domain protein | HC | chr8:691...   722   0.0  
Medtr8g019560.3 | CTC-interacting domain protein | HC | chr8:691...   715   0.0  
Medtr2g099480.1 | CTC-interacting domain protein, putative | HC ...   518   e-147
Medtr3g051270.3 | SM domain found in ataxin-2 protein | HC | chr...    72   1e-12
Medtr3g051270.2 | SM domain found in ataxin-2 protein | HC | chr...    72   1e-12
Medtr3g051270.1 | SM domain found in ataxin-2 protein | HC | chr...    72   1e-12

>Medtr8g019560.2 | CTC-interacting domain protein | HC |
           chr8:6913038-6903510 | 20130731
          Length = 638

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/540 (70%), Positives = 414/540 (76%), Gaps = 21/540 (3%)

Query: 1   MNLQQVGQPKSSNGYGRRKSEKEGATKSDNKIPSGKSNTSRLVSTGAMTGNKSGSDESPS 60
           MNLQQVGQPK SNGYGRRKSEK+ A+KS   +  GKSN  RL STGA+TG+K GS ESPS
Sbjct: 1   MNLQQVGQPKPSNGYGRRKSEKDAASKS---VAPGKSNAGRLASTGAVTGSKGGSYESPS 57

Query: 61  HDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRSG 120
            DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHAT+T+KDFGIILKMA LTKDGSS+GQ SG
Sbjct: 58  RDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSG 117

Query: 121 VELLNKAPSKTFIIPGKELVQVIAKDIAVSRDGQSSESHYDMHQEIMVDSVISQSHHVEI 180
            E ++KAPSKT IIPGKELVQVIAKD+AVS     SESHYD+HQEIMVDSVISQ  HV++
Sbjct: 118 AEFVSKAPSKTLIIPGKELVQVIAKDVAVSTSDLVSESHYDVHQEIMVDSVISQPRHVDL 177

Query: 181 GRELQRWVPDEDAPQCPELENIFDDPWN--RGWNQFETNEMLFGVKSTFNEEIYTTKLEK 238
           GREL RWVPDED PQCPEL+NIFD PWN  RGW+QFETN+MLFGVKSTF+EE+YTTKLEK
Sbjct: 178 GRELHRWVPDEDVPQCPELDNIFDGPWNSSRGWDQFETNKMLFGVKSTFDEELYTTKLEK 237

Query: 239 GPRTRELERQALRIAREIEGEETQDLHLAEERGLYHDNFDID------AVYRGKGVDDSG 292
           GP+ RELERQALRIAREIEGEETQDLHLAEERGLY D+FDID      +VYRGKGVDD  
Sbjct: 238 GPQMRELERQALRIAREIEGEETQDLHLAEERGLYPDDFDIDEETRFSSVYRGKGVDDE- 296

Query: 293 CDENEDKLLDSLNTETFGDMSGSVIMRPGDISGGKGNNGAQTWSNLSSV--------DHL 344
            DENED LLDS N+ETFGD+S  VI RPG +SGGKG NGAQTWSN S +        D  
Sbjct: 297 YDENEDNLLDSQNSETFGDISDPVIKRPGKVSGGKGKNGAQTWSNFSFMSSQSKTGGDLC 356

Query: 345 RSGSYDHAKQLVSDLPAQSLLFSDGESRIHDNSVRDLHGANNSTAGESKMQAEDVQLSKS 404
           RS SYDHAKQL S+LP QS  FSDGESRI DNSV DLHGA+ ST  E++MQAEDVQL K 
Sbjct: 357 RSDSYDHAKQLPSELPGQSYSFSDGESRIQDNSVCDLHGADGSTKEENQMQAEDVQLLKF 416

Query: 405 EDLQSSLNLKKDGSDKGELSP-NATSSAPSAHTLPKTDEKTGSIGELTGGSASVKANGET 463
           EDLQ ++NLKKDGSDKG LSP NA S   S H   K DEKTGS GELTGGS S KA+ ET
Sbjct: 417 EDLQPAVNLKKDGSDKGGLSPANAPSYVSSTHISSKIDEKTGSHGELTGGSESGKASWET 476

Query: 464 KSVNXXXXXXXXXXXXXDYVAGVTTXXXXXXXXXXXXXXXXXXXXXXNPYAKEFKLNPNA 523
           KSVN             D VAGV T                      NP AKEFKLNPNA
Sbjct: 477 KSVNSRGRLETRISSGSDRVAGVATYSGPSLSPSSSLGSLSSEKSTLNPNAKEFKLNPNA 536


>Medtr8g019560.1 | CTC-interacting domain protein | HC |
           chr8:6911576-6903793 | 20130731
          Length = 668

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/540 (70%), Positives = 414/540 (76%), Gaps = 21/540 (3%)

Query: 1   MNLQQVGQPKSSNGYGRRKSEKEGATKSDNKIPSGKSNTSRLVSTGAMTGNKSGSDESPS 60
           MNLQQVGQPK SNGYGRRKSEK+ A+KS   +  GKSN  RL STGA+TG+K GS ESPS
Sbjct: 31  MNLQQVGQPKPSNGYGRRKSEKDAASKS---VAPGKSNAGRLASTGAVTGSKGGSYESPS 87

Query: 61  HDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRSG 120
            DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHAT+T+KDFGIILKMA LTKDGSS+GQ SG
Sbjct: 88  RDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSG 147

Query: 121 VELLNKAPSKTFIIPGKELVQVIAKDIAVSRDGQSSESHYDMHQEIMVDSVISQSHHVEI 180
            E ++KAPSKT IIPGKELVQVIAKD+AVS     SESHYD+HQEIMVDSVISQ  HV++
Sbjct: 148 AEFVSKAPSKTLIIPGKELVQVIAKDVAVSTSDLVSESHYDVHQEIMVDSVISQPRHVDL 207

Query: 181 GRELQRWVPDEDAPQCPELENIFDDPWN--RGWNQFETNEMLFGVKSTFNEEIYTTKLEK 238
           GREL RWVPDED PQCPEL+NIFD PWN  RGW+QFETN+MLFGVKSTF+EE+YTTKLEK
Sbjct: 208 GRELHRWVPDEDVPQCPELDNIFDGPWNSSRGWDQFETNKMLFGVKSTFDEELYTTKLEK 267

Query: 239 GPRTRELERQALRIAREIEGEETQDLHLAEERGLYHDNFDID------AVYRGKGVDDSG 292
           GP+ RELERQALRIAREIEGEETQDLHLAEERGLY D+FDID      +VYRGKGVDD  
Sbjct: 268 GPQMRELERQALRIAREIEGEETQDLHLAEERGLYPDDFDIDEETRFSSVYRGKGVDDE- 326

Query: 293 CDENEDKLLDSLNTETFGDMSGSVIMRPGDISGGKGNNGAQTWSNLSSV--------DHL 344
            DENED LLDS N+ETFGD+S  VI RPG +SGGKG NGAQTWSN S +        D  
Sbjct: 327 YDENEDNLLDSQNSETFGDISDPVIKRPGKVSGGKGKNGAQTWSNFSFMSSQSKTGGDLC 386

Query: 345 RSGSYDHAKQLVSDLPAQSLLFSDGESRIHDNSVRDLHGANNSTAGESKMQAEDVQLSKS 404
           RS SYDHAKQL S+LP QS  FSDGESRI DNSV DLHGA+ ST  E++MQAEDVQL K 
Sbjct: 387 RSDSYDHAKQLPSELPGQSYSFSDGESRIQDNSVCDLHGADGSTKEENQMQAEDVQLLKF 446

Query: 405 EDLQSSLNLKKDGSDKGELSP-NATSSAPSAHTLPKTDEKTGSIGELTGGSASVKANGET 463
           EDLQ ++NLKKDGSDKG LSP NA S   S H   K DEKTGS GELTGGS S KA+ ET
Sbjct: 447 EDLQPAVNLKKDGSDKGGLSPANAPSYVSSTHISSKIDEKTGSHGELTGGSESGKASWET 506

Query: 464 KSVNXXXXXXXXXXXXXDYVAGVTTXXXXXXXXXXXXXXXXXXXXXXNPYAKEFKLNPNA 523
           KSVN             D VAGV T                      NP AKEFKLNPNA
Sbjct: 507 KSVNSRGRLETRISSGSDRVAGVATYSGPSLSPSSSLGSLSSEKSTLNPNAKEFKLNPNA 566


>Medtr8g019560.3 | CTC-interacting domain protein | HC |
           chr8:6913187-6903209 | 20130731
          Length = 636

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/540 (70%), Positives = 412/540 (76%), Gaps = 23/540 (4%)

Query: 1   MNLQQVGQPKSSNGYGRRKSEKEGATKSDNKIPSGKSNTSRLVSTGAMTGNKSGSDESPS 60
           MNLQQVGQPK SNGYGRRKSEK+ A+KS   +  GKSN  RL ST  +TG+K GS ESPS
Sbjct: 1   MNLQQVGQPKPSNGYGRRKSEKDAASKS---VAPGKSNAGRLAST--VTGSKGGSYESPS 55

Query: 61  HDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRSG 120
            DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHAT+T+KDFGIILKMA LTKDGSS+GQ SG
Sbjct: 56  RDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGIILKMACLTKDGSSQGQSSG 115

Query: 121 VELLNKAPSKTFIIPGKELVQVIAKDIAVSRDGQSSESHYDMHQEIMVDSVISQSHHVEI 180
            E ++KAPSKT IIPGKELVQVIAKD+AVS     SESHYD+HQEIMVDSVISQ  HV++
Sbjct: 116 AEFVSKAPSKTLIIPGKELVQVIAKDVAVSTSDLVSESHYDVHQEIMVDSVISQPRHVDL 175

Query: 181 GRELQRWVPDEDAPQCPELENIFDDPWN--RGWNQFETNEMLFGVKSTFNEEIYTTKLEK 238
           GREL RWVPDED PQCPEL+NIFD PWN  RGW+QFETN+MLFGVKSTF+EE+YTTKLEK
Sbjct: 176 GRELHRWVPDEDVPQCPELDNIFDGPWNSSRGWDQFETNKMLFGVKSTFDEELYTTKLEK 235

Query: 239 GPRTRELERQALRIAREIEGEETQDLHLAEERGLYHDNFDID------AVYRGKGVDDSG 292
           GP+ RELERQALRIAREIEGEETQDLHLAEERGLY D+FDID      +VYRGKGVDD  
Sbjct: 236 GPQMRELERQALRIAREIEGEETQDLHLAEERGLYPDDFDIDEETRFSSVYRGKGVDDE- 294

Query: 293 CDENEDKLLDSLNTETFGDMSGSVIMRPGDISGGKGNNGAQTWSNLSSV--------DHL 344
            DENED LLDS N+ETFGD+S  VI RPG +SGGKG NGAQTWSN S +        D  
Sbjct: 295 YDENEDNLLDSQNSETFGDISDPVIKRPGKVSGGKGKNGAQTWSNFSFMSSQSKTGGDLC 354

Query: 345 RSGSYDHAKQLVSDLPAQSLLFSDGESRIHDNSVRDLHGANNSTAGESKMQAEDVQLSKS 404
           RS SYDHAKQL S+LP QS  FSDGESRI DNSV DLHGA+ ST  E++MQAEDVQL K 
Sbjct: 355 RSDSYDHAKQLPSELPGQSYSFSDGESRIQDNSVCDLHGADGSTKEENQMQAEDVQLLKF 414

Query: 405 EDLQSSLNLKKDGSDKGELSP-NATSSAPSAHTLPKTDEKTGSIGELTGGSASVKANGET 463
           EDLQ ++NLKKDGSDKG LSP NA S   S H   K DEKTGS GELTGGS S KA+ ET
Sbjct: 415 EDLQPAVNLKKDGSDKGGLSPANAPSYVSSTHISSKIDEKTGSHGELTGGSESGKASWET 474

Query: 464 KSVNXXXXXXXXXXXXXDYVAGVTTXXXXXXXXXXXXXXXXXXXXXXNPYAKEFKLNPNA 523
           KSVN             D VAGV T                      NP AKEFKLNPNA
Sbjct: 475 KSVNSRGRLETRISSGSDRVAGVATYSGPSLSPSSSLGSLSSEKSTLNPNAKEFKLNPNA 534


>Medtr2g099480.1 | CTC-interacting domain protein, putative | HC |
           chr2:42641646-42649233 | 20130731
          Length = 613

 Score =  518 bits (1335), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/485 (60%), Positives = 342/485 (70%), Gaps = 27/485 (5%)

Query: 60  SHDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRS 119
           SHDRLVY+TTCLIG QVE+QVKNGSIYSGIFHATDTDKDFGIILKMARLTKD SS+G++S
Sbjct: 37  SHDRLVYVTTCLIGQQVEIQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDASSQGKKS 96

Query: 120 GVELLNKAPSKTFIIPGKELVQVIAKDIAVSRDGQSSESHYDMHQEIMVDSVISQSHHVE 179
           G E ++KAPSK  IIP KELVQVIA+ +AV++DG  SE  +  +QEIMVDS+ISQSHH E
Sbjct: 97  GAEFVSKAPSKILIIPAKELVQVIAQGVAVTKDGLPSEPQHGRNQEIMVDSLISQSHHAE 156

Query: 180 IGRELQRWVPDEDAPQCPELENIFDDPWNRGWNQFETNEMLFGVKSTFNEEIYTTKLEKG 239
           +GREL+ WVPDED PQCPEL+NIFD  WNRGW+QF TN+ LFGVKSTFNEE+YTTKLEKG
Sbjct: 157 LGRELEPWVPDEDDPQCPELDNIFDGHWNRGWDQFATNKALFGVKSTFNEELYTTKLEKG 216

Query: 240 PRTRELERQALRIAREIEGEETQDLHLAEERGLYHD-NFDID------AVYRGKGVDDSG 292
           PRTRELE QALRI REIEGEETQDLHLAEERGL+ D  FDID      +VYRGK VDD+ 
Sbjct: 217 PRTRELELQALRIEREIEGEETQDLHLAEERGLHLDGEFDIDEETRFSSVYRGKHVDDA- 275

Query: 293 CDENEDKLLDSLNTETFGDMSGSVIMRPGDISGGKGNNGAQTWSNLS------------S 340
            +ENED L+DS N+E F  + GSV  R  +++ G+GN+ A   +N S             
Sbjct: 276 YEENEDMLMDSHNSEMFSGIFGSVDERSDEMNSGEGNDAAHALANSSFMDRPQSSQSNTG 335

Query: 341 VDHLRSGSYDHAKQLVSDLPAQSLLFSDGESRIHDNSVRDLHGANNSTAGESKM--QAED 398
           VD  RS +YDHAKQ  S++P++S  F DGESRI +N V +L GA+ +T  E+ +  Q ED
Sbjct: 336 VDLSRSSAYDHAKQFTSEIPSKSYSFLDGESRIQENPVHNLRGASGNTKEENLIVQQGED 395

Query: 399 VQLSKSEDLQSSLNLKKDGSDKGELSPNATSSAPSAHTLPKTDEKTGSIGELTGGSASVK 458
           VQLSK ED Q+SL  KKDGSDKG LSPNA+S APS+H   K+ EKTGS G+ T G A  K
Sbjct: 396 VQLSKYEDSQASLYFKKDGSDKGVLSPNASSYAPSSHISLKSREKTGSPGDSTEGLAYHK 455

Query: 459 ANGETKSVNXXXXXXXXXXXXXDYVAGVTTXXXXXXXXXXXXXXXXXXXXXXNPYAKEFK 518
           ANG TK ++             D V GV                        N  AKEFK
Sbjct: 456 ANGATKYID-----SRGASSGSDSVRGVAGSSGPGLSPSSSVGSLSSEKSSLNLNAKEFK 510

Query: 519 LNPNA 523
           LN NA
Sbjct: 511 LNSNA 515


>Medtr3g051270.3 | SM domain found in ataxin-2 protein | HC |
           chr3:20227730-20238343 | 20130731
          Length = 479

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 5/92 (5%)

Query: 62  DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRSGV 121
           + ++ +T  +IG  V+V VK+GS+YSGIF    T+ +FG++LK AR+TK G  RG  +  
Sbjct: 25  EAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGVVLKQARMTKKG--RGHSN-- 80

Query: 122 ELLNKAPSKTFIIPGKELVQVIAKDIAVSRDG 153
            + N+    T ++   +LVQV+AK I +  DG
Sbjct: 81  -VGNETLVDTLVVLSDDLVQVVAKGITLPADG 111


>Medtr3g051270.2 | SM domain found in ataxin-2 protein | HC |
           chr3:20227809-20238324 | 20130731
          Length = 463

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 5/92 (5%)

Query: 62  DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRSGV 121
           + ++ +T  +IG  V+V VK+GS+YSGIF    T+ +FG++LK AR+TK G  RG  +  
Sbjct: 25  EAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGVVLKQARMTKKG--RGHSN-- 80

Query: 122 ELLNKAPSKTFIIPGKELVQVIAKDIAVSRDG 153
            + N+    T ++   +LVQV+AK I +  DG
Sbjct: 81  -VGNETLVDTLVVLSDDLVQVVAKGITLPADG 111


>Medtr3g051270.1 | SM domain found in ataxin-2 protein | HC |
           chr3:20227730-20237934 | 20130731
          Length = 488

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 5/92 (5%)

Query: 62  DRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRSGV 121
           + ++ +T  +IG  V+V VK+GS+YSGIF    T+ +FG++LK AR+TK G  RG  +  
Sbjct: 25  EAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGVVLKQARMTKKG--RGHSN-- 80

Query: 122 ELLNKAPSKTFIIPGKELVQVIAKDIAVSRDG 153
            + N+    T ++   +LVQV+AK I +  DG
Sbjct: 81  -VGNETLVDTLVVLSDDLVQVVAKGITLPADG 111