Miyakogusa Predicted Gene
- Lj3g3v2655630.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2655630.1 tr|A3LNE7|A3LNE7_PICST Poly(A)-binding protein
binding protein (Fragment) OS=Scheffersomyces
stipiti,29.86,2e-18,ATAXIN 2-RELATED,NULL; coiled-coil,NULL; SM-ATX,SM
domain found in ataxin-2; LsmAD,LsmAD domain; seg,CUFF.44339.1
(1569 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV418429 similar to UniRef100_A2PZE4 Cluster: Ataxin-2 ... 680 0.0
gnl|LJGI|TC69660 similar to UniRef100_A7P6L1 Cluster: Chromosome... 609 e-173
gnl|LJGI|TC77123 weakly similar to UniRef100_A7P6L1 Cluster: Chr... 258 9e-68
gnl|LJGI|AV775026 84 3e-15
>gnl|LJGI|AV418429 similar to UniRef100_A2PZE4 Cluster: Ataxin-2 related protein; n=1;
Ipomoea nil|Rep: Ataxin-2 related protein - Ipomoea nil
(Japanese morning glory) (Pharbitis nil), partial (11%)
Length = 402
Score = 680 bits (343), Expect = 0.0
Identities = 384/402 (95%), Gaps = 18/402 (4%)
Strand = Plus / Plus
Query: 730 gaattggaaagacaagctttaagaatagcaagagaaattgagggtgaggaaacccaagat 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaattggaaagacaagctttaagaatagcaagagaaattgagggtgaggaaacccaagat 60
Query: 790 cttcatctagcagaggaaaggggcctttaccatgataactttgatattgatg-------- 841
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttcatctagcagaggaaaggggcctttaccatgataactttgatattgatgaagagact 120
Query: 842 ----------cagtgtataggggtaaaggtgttgatgatagtggatgtgatgaaaatgag 891
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cggttctcctcagtgtataggggtaaaggtgttgatgatagtggatgtgatgaaaatgag 180
Query: 892 gacaagctgttggattcactcaatactgaaacttttggtgatatgtctggttcggttatt 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacaagctgttggattcactcaatactgaaacttttggtgatatgtctggttcggttatt 240
Query: 952 atgaggccaggtgatataagtggcggaaaaggcaataatggagctcaaacatggtcaaat 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgaggccaggtgatataagtggcggaaaaggcaataatggagctcaaacatggtcaaat 300
Query: 1012 ttatcctctgtggaccacttacgctctggttcttatgatcatgctaagcagttagtatct 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttatcctctgtggaccacttacgctctggttcttatgatcatgctaagcagttagtatct 360
Query: 1072 gatctccctgcccaaagcttattgttttcggatggggaaagc 1113
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatctccctgcccaaagcttattgttttcggatggggaaagc 402
>gnl|LJGI|TC69660 similar to UniRef100_A7P6L1 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 552
Score = 609 bits (307), Expect = e-173
Identities = 310/311 (99%)
Strand = Plus / Plus
Query: 1 atgaatttgcaacaagttggacagcctaaatcatctaatggatatggtcgtcggaaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgaatttgcaacaagttggacagcctaaatcatctaatggatatggtcgtcggaaatct 301
Query: 61 gaaaaagaaggggcaactaagtctgataataagattccctctggtaaatcaaataccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaaaaagaaggggcaactaagtctgataataagattccctctggtaaatcaaataccagc 361
Query: 121 agattagtgagcacaggcgcaatgactggcaataaaagtggtagtgatgagagtccttca 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agattagtgagcacaggcgcgatgactggcaataaaagtggtagtgatgagagtccttca 421
Query: 181 catgatcgactagtgtatttaacaacatgtcttattgggcaccaggtggaagtccaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 catgatcgactagtgtatttaacaacatgtcttattgggcaccaggtggaagtccaggtg 481
Query: 241 aaaaatggatctatatactctggaatatttcatgcaacagatactgacaaagattttgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaaaatggatctatatactctggaatatttcatgcaacagatactgacaaagattttgga 541
Query: 301 atcattttgaa 311
|||||||||||
Sbjct: 542 atcattttgaa 552
>gnl|LJGI|TC77123 weakly similar to UniRef100_A7P6L1 Cluster: Chromosome chr9
scaffold_7, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr9 scaffold_7, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 571
Score = 258 bits (130), Expect = 9e-68
Identities = 259/302 (85%)
Strand = Plus / Plus
Query: 1 atgaatttgcaacaagttggacagcctaaatcatctaatggatatggtcgtcggaaatct 60
||||||||||||||| ||| || ||||| || |||||||||||||| || || ||||||
Sbjct: 270 atgaatttgcaacaacctgggcaacctaagtcctctaatggatatggccgccgaaaatct 329
Query: 61 gaaaaagaaggggcaactaagtctgataataagattccctctggtaaatcaaataccagc 120
|||| ||||||||||| |||||| || |||||||| || ||||| || | |||| ||| |
Sbjct: 330 gaaagagaaggggcaaataagtcagagaataagatcccatctggaaatttaaatgccaac 389
Query: 121 agattagtgagcacaggcgcaatgactggcaataaaagtggtagtgatgagagtccttca 180
||||| || ||||| ||| |||||||| | || || ||||| |||||||||| |||
Sbjct: 390 agattgacaagtacaggtgcagcgactggcagtgaaggtagtagttatgagagtccctca 449
Query: 181 catgatcgactagtgtatttaacaacatgtcttattgggcaccaggtggaagtccaggtg 240
||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||
Sbjct: 450 catgatcgactcgtgtatataaccacatgtctaattgggcaccaggtggaagtccaggtg 509
Query: 241 aaaaatggatctatatactctggaatatttcatgcaacagatactgacaaagattttgga 300
|| ||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||
Sbjct: 510 aacaatgggtctatatactcaggaatatttcatgcaacaaatacagacaaagattttgga 569
Query: 301 at 302
||
Sbjct: 570 at 571
>gnl|LJGI|AV775026
Length = 423
Score = 83.8 bits (42), Expect = 3e-15
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 36 taatggatatggtcgtcggaaatctgaaaaagaaggggcaactaagtctgataataagat 95
|||||||||||| ||||| |||||||||| ||||||||||| |||||| || ||||||||
Sbjct: 242 taatggatatggccgtcgaaaatctgaaagagaaggggcaaataagtcagagaataagat 301
Query: 96 tccctctggtaaatcaaataccagcagatt 125
|| ||||| || | |||| ||||||||||
Sbjct: 302 cccatctggaaatttaaatgccagcagatt 331