Miyakogusa Predicted Gene

Lj3g3v2579350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2579350.1 Non Characterized Hit- tr|H2XR40|H2XR40_CIOIN
Uncharacterized protein (Fragment) OS=Ciona
intestinal,32.54,0.00000002,RING/U-box,NULL; ZF_RING_2,Zinc finger,
RING-type; no description,Zinc finger, RING/FYVE/PHD-type;
s,NODE_23673_length_1883_cov_44.977695.path2.1
         (127 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g020850.1 | E3 ubiquitin ligase | HC | chr8:7360874-735521...   177   3e-45
Medtr1g018650.1 | ubiquitin-protein ligase, putative | HC | chr1...    56   1e-08
Medtr1g089900.1 | E3 ubiquitin ligase-like protein | HC | chr1:4...    54   5e-08
Medtr7g068580.1 | ubiquitin-protein ligase, putative | HC | chr7...    51   3e-07
Medtr4g098560.1 | MND1-interacting protein | HC | chr4:40623187-...    49   1e-06

>Medtr8g020850.1 | E3 ubiquitin ligase | HC | chr8:7360874-7355214 |
           20130731
          Length = 383

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 96/127 (75%), Gaps = 1/127 (0%)

Query: 1   MIVDLSFKTKILFWSGIVLGSMSVGVLSYAVVXXXXXXXXXXXXXXXXXXXXTVSVNVDP 60
           MIVDLSFKTK+LFWSGI+LGSMSVG++ YAVV                       +   P
Sbjct: 258 MIVDLSFKTKLLFWSGILLGSMSVGIIGYAVVRNWNKWKQWKQQRQLQQRR-QQPIEPVP 316

Query: 61  HLDDETEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRD 120
             DDE EDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVE EV+PKCPVCRQE+RD
Sbjct: 317 PTDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVESEVAPKCPVCRQEVRD 376

Query: 121 SVRIFES 127
           SVRIFES
Sbjct: 377 SVRIFES 383


>Medtr1g018650.1 | ubiquitin-protein ligase, putative | HC |
           chr1:5422995-5420514 | 20130731
          Length = 401

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 13/75 (17%)

Query: 64  DETEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVS----------PK--- 110
           D +E++ D +LC+IC   +R   F+PCGH   C  CA  +  E S          PK   
Sbjct: 327 DVSEELYDEKLCIICFDEQRNCFFVPCGHCATCYDCAQRIMDEESNSTLTDQIANPKSKV 386

Query: 111 CPVCRQEIRDSVRIF 125
           CPVCR+ I    R+F
Sbjct: 387 CPVCRRVINKVKRLF 401


>Medtr1g089900.1 | E3 ubiquitin ligase-like protein | HC |
           chr1:40259713-40254728 | 20130731
          Length = 341

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 73  QLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
            LCVICL +   SVF+PCGH+ CC  C+  +       CP+CR++I  +V+ F
Sbjct: 292 NLCVICLEQEYNSVFVPCGHMCCCTACSSHL-----TSCPLCRRQIEKAVKTF 339


>Medtr7g068580.1 | ubiquitin-protein ligase, putative | HC |
           chr7:25129211-25135611 | 20130731
          Length = 447

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 73  QLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           +LC IC    R   F+PCGH V C  C   +  E +  CPVCR+ ++   RIF
Sbjct: 394 RLCAICFDAPRDCFFLPCGHCVACFACGSRI-AEAAGICPVCRRNMKKVRRIF 445


>Medtr4g098560.1 | MND1-interacting protein | HC |
           chr4:40623187-40627435 | 20130731
          Length = 737

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 75  CVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           C+IC+      VF+PC H V C  C+          CP CR +I+  +R+F
Sbjct: 683 CIICMKDEVSVVFLPCAHQVMCAKCSDEYGKNGKAACPCCRVQIQQRIRVF 733