Miyakogusa Predicted Gene

Lj3g3v2579350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2579350.1 Non Chatacterized Hit- tr|H2XR40|H2XR40_CIOIN
Uncharacterized protein (Fragment) OS=Ciona
intestinal,32.54,0.00000002,RING/U-box,NULL; ZF_RING_2,Zinc finger,
RING-type; no description,Zinc finger, RING/FYVE/PHD-type;
s,NODE_23673_length_1883_cov_44.977695.path2.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54150.1 | Symbols:  | E3 Ubiquitin ligase family protein | c...   108   1e-24
AT4G24204.3 | Symbols:  | RING/U-box superfamily protein | chr4:...    62   8e-11
AT4G24204.2 | Symbols:  | RING/U-box superfamily protein | chr4:...    62   1e-10
AT4G24204.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    61   2e-10
AT2G35330.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    52   8e-08
AT2G35330.2 | Symbols:  | RING/U-box superfamily protein | chr2:...    52   8e-08
AT1G63900.1 | Symbols: DAL1 | E3 Ubiquitin ligase family protein...    51   3e-07
AT1G63900.2 | Symbols: DAL1 | E3 Ubiquitin ligase family protein...    50   3e-07
AT3G09770.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    50   5e-07
AT1G59560.1 | Symbols: ZCF61, DAL2 | E3 Ubiquitin ligase family ...    49   8e-07
AT5G19080.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    48   2e-06
AT5G23110.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...    48   2e-06
AT2G38185.4 | Symbols:  | RING/U-box superfamily protein | chr2:...    47   2e-06
AT2G38185.2 | Symbols:  | RING/U-box superfamily protein | chr2:...    47   3e-06
AT2G38185.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    47   3e-06
AT2G38185.3 | Symbols:  | RING/U-box superfamily protein | chr2:...    47   3e-06
AT2G38195.2 | Symbols:  | RING/U-box superfamily protein | chr2:...    46   7e-06
AT3G53410.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    45   8e-06
AT2G38195.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    45   8e-06

>AT1G54150.1 | Symbols:  | E3 Ubiquitin ligase family protein |
           chr1:20215480-20217303 FORWARD LENGTH=383
          Length = 383

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 77/130 (59%), Gaps = 9/130 (6%)

Query: 1   MIVDLSFKTKILFWSGIVLGSMSVGVLSYAVVXXXXXXXXXXXXXXXXXXXXTVSVNVDP 60
           MI DL  +T  +F   ++LG +SVG+LSYA V                          D 
Sbjct: 260 MIEDLMEQTNFIFLGSVILGIVSVGILSYAAVRTWNKWKQWNHQRELPQRPN------DS 313

Query: 61  HLDDETED---VPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQE 117
            +DDE ED   +PDG+LCVIC+ RRR   FIPCGH+VCC+ CA +VE E++PKCPVC Q 
Sbjct: 314 VVDDEPEDADEIPDGELCVICVSRRRVPAFIPCGHVVCCRRCASTVERELNPKCPVCLQS 373

Query: 118 IRDSVRIFES 127
           IR S+R++ S
Sbjct: 374 IRGSMRVYYS 383


>AT4G24204.3 | Symbols:  | RING/U-box superfamily protein |
           chr4:12562069-12562815 REVERSE LENGTH=178
          Length = 178

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%)

Query: 66  TEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRI 124
           ++DV    LCVIC   RR   F+PCGH   C+GCA  +  E S  CP+CR+ IR S R+
Sbjct: 115 SDDVDYSTLCVICFEERRNCFFVPCGHSATCRGCAQRILSEESKVCPICRRVIRKSKRL 173


>AT4G24204.2 | Symbols:  | RING/U-box superfamily protein |
           chr4:12562069-12562646 REVERSE LENGTH=157
          Length = 157

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%)

Query: 66  TEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRI 124
           ++DV    LCVIC   RR   F+PCGH   C+GCA  +  E S  CP+CR+ IR S R+
Sbjct: 94  SDDVDYSTLCVICFEERRNCFFVPCGHSATCRGCAQRILSEESKVCPICRRVIRKSKRL 152


>AT4G24204.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:12562069-12562440 REVERSE LENGTH=123
          Length = 123

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%)

Query: 66  TEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRI 124
           ++DV    LCVIC   RR   F+PCGH   C+GCA  +  E S  CP+CR+ IR S R+
Sbjct: 60  SDDVDYSTLCVICFEERRNCFFVPCGHSATCRGCAQRILSEESKVCPICRRVIRKSKRL 118


>AT2G35330.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:14869179-14871673 FORWARD LENGTH=738
          Length = 738

 Score = 52.4 bits (124), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 75  CVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           C+IC+      VF+PC H V C  C+ S  G     CP CR  ++  +R+F
Sbjct: 684 CLICMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 734


>AT2G35330.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:14869260-14871673 FORWARD LENGTH=711
          Length = 711

 Score = 52.4 bits (124), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 75  CVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           C+IC+      VF+PC H V C  C+ S  G     CP CR  ++  +R+F
Sbjct: 657 CLICMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 707


>AT1G63900.1 | Symbols: DAL1 | E3 Ubiquitin ligase family protein |
           chr1:23717056-23719086 FORWARD LENGTH=343
          Length = 343

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 69  VPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           VPD  LCVICL +   +VF+PCGH+ CC  C+  +       CP+CR+ I  +V+ +
Sbjct: 292 VPD--LCVICLEQEYNAVFVPCGHMCCCTACSSHL-----TSCPLCRRRIDLAVKTY 341


>AT1G63900.2 | Symbols: DAL1 | E3 Ubiquitin ligase family protein |
           chr1:23717056-23719086 FORWARD LENGTH=347
          Length = 347

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 69  VPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           VPD  LCVICL +   +VF+PCGH+ CC  C+  +       CP+CR+ I  +V+ +
Sbjct: 296 VPD--LCVICLEQEYNAVFVPCGHMCCCTACSSHL-----TSCPLCRRRIDLAVKTY 345


>AT3G09770.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:2996402-2997835 REVERSE LENGTH=388
          Length = 388

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 72  GQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRI 124
           G+ CVICL   R +  +PC H+  C GCA  +  + + +CP+CRQ +   + I
Sbjct: 316 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTN-RCPICRQPVERLLEI 367


>AT1G59560.1 | Symbols: ZCF61, DAL2 | E3 Ubiquitin ligase family
           protein | chr1:21881741-21883632 FORWARD LENGTH=338
          Length = 338

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 7/59 (11%)

Query: 68  DVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIFE 126
           D PD  LCV+CL ++  + F+ CGH+ CC  C++ +       CP+CR+ I+  ++I+ 
Sbjct: 286 DTPD--LCVVCLDQKYNTAFVECGHMCCCTPCSLQLR-----TCPLCRERIQQVLKIYR 337


>AT5G19080.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:6378400-6380287 FORWARD LENGTH=378
          Length = 378

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 72  GQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRI 124
           G+ CVICL   + +  +PC HL  C  CA  +  + + KCP+CRQ I + V+I
Sbjct: 318 GKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTN-KCPICRQPIHELVKI 369


>AT5G23110.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
            family protein | chr5:7758307-7775509 FORWARD LENGTH=4706
          Length = 4706

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 65   ETEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRI 124
            E E      LC IC  +      +PCGH V C+ C+ SV      +CP CR ++  ++RI
Sbjct: 4650 EAETAKSQWLCQICQTKEVEVTIVPCGH-VLCRHCSTSVS-----RCPFCRLQVNRTIRI 4703

Query: 125  F 125
            F
Sbjct: 4704 F 4704


>AT2G38185.4 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000155-16002699 FORWARD LENGTH=447
          Length = 447

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 73  QLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           +LC IC    R   F+PCGH V C  C  +++ E    CP+CR++++   RI+
Sbjct: 394 RLCAICFDVPRDCFFLPCGHSVSCYECGTTMQ-EADGSCPICRRKMKKVKRIY 445


>AT2G38185.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000155-16002699 FORWARD LENGTH=441
          Length = 441

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 73  QLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           +LC IC    R   F+PCGH V C  C  +++ E    CP+CR++++   RI+
Sbjct: 388 RLCAICFDVPRDCFFLPCGHSVSCYECGTTMQ-EADGSCPICRRKMKKVKRIY 439


>AT2G38185.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000155-16002699 FORWARD LENGTH=441
          Length = 441

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 73  QLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           +LC IC    R   F+PCGH V C  C  +++ E    CP+CR++++   RI+
Sbjct: 388 RLCAICFDVPRDCFFLPCGHSVSCYECGTTMQ-EADGSCPICRRKMKKVKRIY 439


>AT2G38185.3 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000516-16002699 FORWARD LENGTH=346
          Length = 346

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 73  QLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIF 125
           +LC IC    R   F+PCGH V C  C  +++ E    CP+CR++++   RI+
Sbjct: 293 RLCAICFDVPRDCFFLPCGHSVSCYECGTTMQ-EADGSCPICRRKMKKVKRIY 344


>AT2G38195.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:16002654-16006261 FORWARD LENGTH=326
          Length = 326

 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 68  DVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIFES 127
           +  +  LC IC    R   F+PCGH V C  C   ++     +CP+CR++I    RI+ +
Sbjct: 268 EASNKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIK-RTKGRCPICRKKIMHVKRIYTA 326


>AT3G53410.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:19801175-19802274 REVERSE LENGTH=299
          Length = 299

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 62  LDDETEDVPD-GQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEI 118
           +DD  ED  + G+ CVICL   R +  +PC H+  C GCA  +  + +  CP+CRQ +
Sbjct: 229 VDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTN-LCPICRQPV 285


>AT2G38195.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16003836-16006261 FORWARD LENGTH=399
          Length = 399

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 68  DVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIFES 127
           +  +  LC IC    R   F+PCGH V C  C   ++     +CP+CR++I    RI+ +
Sbjct: 341 EASNKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIK-RTKGRCPICRKKIMHVKRIYTA 399