Miyakogusa Predicted Gene

Lj3g3v2579350.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v2579350.1 Non Chatacterized Hit- tr|H2XR40|H2XR40_CIOIN
Uncharacterized protein (Fragment) OS=Ciona
intestinal,32.54,0.00000002,RING/U-box,NULL; ZF_RING_2,Zinc finger,
RING-type; no description,Zinc finger, RING/FYVE/PHD-type;
s,NODE_23673_length_1883_cov_44.977695.path2.1
         (384 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC60916 homologue to UniRef100_Q4VYC9 Cluster: C3HC4 zi...   494   e-139
gnl|LJGI|TC82159 similar to UniRef100_Q4VYC9 Cluster: C3HC4 zinc...   123   8e-28

>gnl|LJGI|TC60916 homologue to UniRef100_Q4VYC9 Cluster: C3HC4 zinc finger containing
           protein; n=1; Medicago truncatula|Rep: C3HC4 zinc finger
           containing protein - Medicago truncatula (Barrel medic),
           partial (19%)
          Length = 865

 Score =  494 bits (249), Expect = e-139
 Identities = 252/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 132 aaggcagctccagcaacaaaggcaaactgtcagtgttaatgttgatcctcatctggatga 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aaggcagctccagcaacaaaggcaaactgtcagtgttaatgttgatcctcatctggatga 61

                                                                       
Query: 192 cgagactgaagatgttccagatggacagttatgtgttatatgcctgatgaggagaaggcg 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  cgagactgaagatgttccagatggacagttatgtgttatatgcctgatgaggagaaggcg 121

                                                                       
Query: 252 ttctgttttcattccatgtgggcatcttgtatgttgccaagggtgtgccatatcagttga 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttctgttttcattccatgtgggcatcttgtatgttgccaagggtgtgccatatcagttga 181

                                                                       
Query: 312 aggtgaagtgtcacccaagtgtcctgtttgtcgtcaggagattcgggattcggtccggat 371
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 182 aggtgaagtgtcacccaagtgttctgtttgtcgtcaggagattcgggattcggtccggat 241

                        
Query: 372 ctttgaatcttaa 384
           |||||||||||||
Sbjct: 242 ctttgaatcttaa 254


>gnl|LJGI|TC82159 similar to UniRef100_Q4VYC9 Cluster: C3HC4 zinc finger containing
           protein; n=1; Medicago truncatula|Rep: C3HC4 zinc finger
           containing protein - Medicago truncatula (Barrel medic),
           partial (70%)
          Length = 930

 Score =  123 bits (62), Expect = 8e-28
 Identities = 95/106 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatagtagatctttccttcaaaacaaaaatactattttggagtggtattgttcttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||  |   | 
Sbjct: 825 atgatagtagatctttccttcaaaacaaaaatactattttggagtgacattgaaccaaga 884

                                                         
Query: 61  tcaatgtcagttggggtccttagctatgcagttgtgaggaactgga 106
            ||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 885 acaataccagttggggtccttagctatgcagttgtgaggaactgga 930